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Cobalt in PDB 8bb0: The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Hydroxycobalamin.

Protein crystallography data

The structure of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Hydroxycobalamin., PDB code: 8bb0 was solved by J.Whittaker, J.M.Felices Martinez, A.Guskov, D.J.Slotboom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 62.40 / 1.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 49.11, 101.099, 79.893, 90, 97.81, 90
R / Rfree (%) 14.3 / 17.5

Other elements in 8bb0:

The structure of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Hydroxycobalamin. also contains other interesting chemical elements:

Sodium (Na) 10 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Hydroxycobalamin. (pdb code 8bb0). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Hydroxycobalamin., PDB code: 8bb0:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 8bb0

Go back to Cobalt Binding Sites List in 8bb0
Cobalt binding site 1 out of 2 in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Hydroxycobalamin.


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Hydroxycobalamin. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co426

b:13.4
occ:1.00
CO A:I2A426 0.0 13.4 1.0
N01 A:I2A426 1.9 12.2 1.0
N04 A:I2A426 1.9 13.4 1.0
N03 A:I2A426 1.9 14.3 1.0
N02 A:I2A426 1.9 12.9 1.0
N A:I2A426 2.3 13.1 1.0
O01 A:I2A426 2.3 14.2 1.0
C19 A:I2A426 2.8 12.7 1.0
C11 A:I2A426 2.9 14.4 1.0
C04 A:I2A426 2.9 11.6 1.0
C01 A:I2A426 2.9 12.1 1.0
C14 A:I2A426 2.9 14.8 1.0
C06 A:I2A426 2.9 12.0 1.0
C09 A:I2A426 2.9 13.2 1.0
C16 A:I2A426 3.0 13.4 1.0
C54 A:I2A426 3.1 13.0 1.0
C60 A:I2A426 3.3 13.2 1.0
C10 A:I2A426 3.3 14.1 1.0
C05 A:I2A426 3.3 11.5 1.0
C15 A:I2A426 3.3 13.7 1.0
C20 A:I2A426 3.5 12.1 1.0
C55 A:I2A426 3.8 12.7 1.0
C18 A:I2A426 4.1 12.5 1.0
C02 A:I2A426 4.1 11.9 1.0
C12 A:I2A426 4.2 16.1 1.0
C03 A:I2A426 4.2 12.2 1.0
C08 A:I2A426 4.2 13.2 1.0
C13 A:I2A426 4.2 16.1 1.0
C07 A:I2A426 4.2 13.0 1.0
C17 A:I2A426 4.3 13.2 1.0
N12 A:I2A426 4.3 13.7 1.0
C59 A:I2A426 4.5 13.0 1.0
C22 A:I2A426 4.6 12.1 1.0
C29 A:I2A426 4.7 13.5 1.0
C34 A:I2A426 4.8 16.4 1.0
C27 A:I2A426 4.8 11.5 1.0
C39 A:I2A426 4.8 13.5 1.0
C31 A:I2A426 4.9 13.7 1.0
C40 A:I2A426 4.9 13.5 1.0

Cobalt binding site 2 out of 2 in 8bb0

Go back to Cobalt Binding Sites List in 8bb0
Cobalt binding site 2 out of 2 in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Hydroxycobalamin.


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Hydroxycobalamin. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co418

b:14.1
occ:1.00
CO B:I2A418 0.0 14.1 1.0
N01 B:I2A418 1.9 14.0 1.0
N03 B:I2A418 1.9 14.3 1.0
N04 B:I2A418 1.9 14.9 1.0
N02 B:I2A418 1.9 13.3 1.0
N B:I2A418 2.2 22.1 1.0
O01 B:I2A418 2.3 15.8 1.0
C04 B:I2A418 2.8 13.0 1.0
C19 B:I2A418 2.9 13.5 1.0
C14 B:I2A418 2.9 13.9 1.0
C11 B:I2A418 2.9 14.2 1.0
C01 B:I2A418 2.9 13.7 1.0
C09 B:I2A418 2.9 14.0 1.0
C16 B:I2A418 3.0 14.7 1.0
C06 B:I2A418 3.0 13.6 1.0
C54 B:I2A418 3.1 20.6 1.0
C60 B:I2A418 3.2 21.0 1.0
C10 B:I2A418 3.3 14.2 1.0
C05 B:I2A418 3.3 12.8 1.0
C15 B:I2A418 3.3 14.6 1.0
C20 B:I2A418 3.6 13.4 1.0
C55 B:I2A418 3.8 20.7 1.0
C18 B:I2A418 4.1 12.7 1.0
C02 B:I2A418 4.1 13.3 1.0
C03 B:I2A418 4.2 13.4 1.0
C12 B:I2A418 4.2 16.5 1.0
C08 B:I2A418 4.2 14.7 1.0
C13 B:I2A418 4.2 15.8 1.0
C17 B:I2A418 4.2 13.6 1.0
C07 B:I2A418 4.3 14.6 1.0
N12 B:I2A418 4.3 19.7 1.0
C59 B:I2A418 4.4 19.8 1.0
C22 B:I2A418 4.6 13.5 1.0
C29 B:I2A418 4.7 14.6 1.0
C27 B:I2A418 4.8 13.1 1.0
C39 B:I2A418 4.8 15.0 1.0
C34 B:I2A418 4.9 18.3 1.0
C31 B:I2A418 4.9 15.8 1.0
C40 B:I2A418 4.9 13.6 1.0
C36 B:I2A418 4.9 16.9 1.0

Reference:

J.Whittaker, A.Guskov. The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Hydroxycobinamide. To Be Published.
Page generated: Tue Jul 30 19:42:02 2024

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