Cobalt in PDB 8c33: Anaerobic Light Exposed 2.25 Angstrom Crystal Structure of Cobalamin Binding Domain Belonging to A Light-Dependent Transcription Regulator Ttcarh

The structure of Anaerobic Light Exposed 2.25 Angstrom Crystal Structure of Cobalamin Binding Domain Belonging to A Light-Dependent Transcription Regulator Ttcarh, PDB code: 8c33 was solved by H.Poddar, D.Leys, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	58.93 / 2.25
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.918, 72.622, 200.943, 90, 90, 90
R / Rfree (%)	19.8 / 24.8

The structure of Anaerobic Light Exposed 2.25 Angstrom Crystal Structure of Cobalamin Binding Domain Belonging to A Light-Dependent Transcription Regulator Ttcarh also contains other interesting chemical elements:

Bromine

(Br)

1 atom

The binding sites of Cobalt atom in the Anaerobic Light Exposed 2.25 Angstrom Crystal Structure of Cobalamin Binding Domain Belonging to A Light-Dependent Transcription Regulator Ttcarh (pdb code 8c33). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 4 binding sites of Cobalt where determined in the Anaerobic Light Exposed 2.25 Angstrom Crystal Structure of Cobalamin Binding Domain Belonging to A Light-Dependent Transcription Regulator Ttcarh, PDB code: 8c33:
Jump to Cobalt binding site number: 1; 2; 3; 4;

Cobalt binding site 1 out of 4 in the Anaerobic Light Exposed 2.25 Angstrom Crystal Structure of Cobalamin Binding Domain Belonging to A Light-Dependent Transcription Regulator Ttcarh


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Anaerobic Light Exposed 2.25 Angstrom Crystal Structure of Cobalamin Binding Domain Belonging to A Light-Dependent Transcription Regulator Ttcarh within 5.0Å range: probe atom residue distance (Å) B Occ A:Co301 b:39.2 occ:1.00 CO A:B12301 0.0 39.2 1.0 N21 A:B12301 1.8 39.6 1.0 N23 A:B12301 1.8 43.9 1.0 N22 A:B12301 1.9 42.5 1.0 N24 A:B12301 1.9 39.9 1.0 NE2 A:HIS132 2.2 39.6 1.0 C19 A:B12301 2.7 41.6 1.0 C4 A:B12301 2.8 41.9 1.0 C14 A:B12301 2.8 43.1 1.0 C1 A:B12301 2.8 41.8 1.0 C11 A:B12301 2.8 45.2 1.0 C9 A:B12301 2.9 47.5 1.0 C6 A:B12301 2.9 44.3 1.0 C16 A:B12301 3.0 38.1 1.0 CE1 A:HIS132 3.1 39.6 1.0 C10 A:B12301 3.2 46.5 1.0 C5 A:B12301 3.2 45.8 1.0 C15 A:B12301 3.3 40.3 1.0 CD2 A:HIS132 3.5 39.0 1.0 C20 A:B12301 3.6 42.0 1.0 C2 A:B12301 3.9 44.1 1.0 C3 A:B12301 4.1 44.4 1.0 C13 A:B12301 4.1 42.8 1.0 C18 A:B12301 4.1 41.9 1.0 C12 A:B12301 4.2 44.9 1.0 C8 A:B12301 4.2 54.7 1.0 C7 A:B12301 4.2 52.0 1.0 C17 A:B12301 4.2 39.9 1.0 C26 A:B12301 4.3 45.6 1.0 ND1 A:HIS132 4.3 38.0 1.0 CG A:HIS132 4.6 38.0 1.0 C35 A:B12301 4.7 50.3 1.0 C53 A:B12301 4.8 39.4 1.0 C48 A:B12301 4.9 44.7 1.0 C46 A:B12301 4.9 45.1 1.0 C37 A:B12301 4.9 56.5 1.0 C41 A:B12301 5.0 60.7 1.0 CD2 A:LEU225 5.0 36.2 1.0

Cobalt binding site 2 out of 4 in the Anaerobic Light Exposed 2.25 Angstrom Crystal Structure of Cobalamin Binding Domain Belonging to A Light-Dependent Transcription Regulator Ttcarh


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Anaerobic Light Exposed 2.25 Angstrom Crystal Structure of Cobalamin Binding Domain Belonging to A Light-Dependent Transcription Regulator Ttcarh within 5.0Å range: probe atom residue distance (Å) B Occ B:Co301 b:34.3 occ:1.00 CO B:B12301 0.0 34.3 1.0 N21 B:B12301 1.8 33.3 1.0 N23 B:B12301 1.8 35.2 1.0 N22 B:B12301 1.9 36.2 1.0 N24 B:B12301 1.9 33.6 1.0 NE2 B:HIS132 2.2 39.2 1.0 C19 B:B12301 2.8 33.1 1.0 C14 B:B12301 2.8 35.6 1.0 C4 B:B12301 2.8 31.8 1.0 C1 B:B12301 2.8 34.1 1.0 C11 B:B12301 2.8 35.7 1.0 C9 B:B12301 2.9 36.9 1.0 C6 B:B12301 2.9 35.3 1.0 C16 B:B12301 2.9 32.2 1.0 CE1 B:HIS132 3.0 41.3 1.0 C10 B:B12301 3.2 35.4 1.0 C5 B:B12301 3.3 34.1 1.0 C15 B:B12301 3.3 32.2 1.0 CD2 B:HIS132 3.4 38.6 1.0 C20 B:B12301 3.5 32.9 1.0 C2 B:B12301 4.0 35.3 1.0 C3 B:B12301 4.1 33.5 1.0 C13 B:B12301 4.1 35.7 1.0 C18 B:B12301 4.1 33.7 1.0 C12 B:B12301 4.1 36.2 1.0 C8 B:B12301 4.2 41.8 1.0 C7 B:B12301 4.2 39.1 1.0 C17 B:B12301 4.2 34.0 1.0 ND1 B:HIS132 4.3 38.7 1.0 C26 B:B12301 4.4 35.0 1.0 CG B:HIS132 4.5 38.6 1.0 C35 B:B12301 4.7 36.3 1.0 C53 B:B12301 4.8 31.6 1.0 C37 B:B12301 4.8 43.2 1.0 C46 B:B12301 4.9 35.5 1.0 C48 B:B12301 4.9 38.8 1.0 C41 B:B12301 4.9 48.2 1.0 C54 B:B12301 5.0 34.9 1.0

Cobalt binding site 3 out of 4 in the Anaerobic Light Exposed 2.25 Angstrom Crystal Structure of Cobalamin Binding Domain Belonging to A Light-Dependent Transcription Regulator Ttcarh


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Anaerobic Light Exposed 2.25 Angstrom Crystal Structure of Cobalamin Binding Domain Belonging to A Light-Dependent Transcription Regulator Ttcarh within 5.0Å range: probe atom residue distance (Å) B Occ C:Co301 b:66.8 occ:1.00 CO C:B12301 0.0 66.8 1.0 N23 C:B12301 1.8 64.0 1.0 N21 C:B12301 1.8 72.1 1.0 N22 C:B12301 1.9 70.2 1.0 N24 C:B12301 1.9 68.2 1.0 NE2 C:HIS132 2.2 63.6 1.0 C19 C:B12301 2.7 69.5 1.0 C14 C:B12301 2.8 65.0 1.0 C9 C:B12301 2.8 71.2 1.0 C11 C:B12301 2.8 67.5 1.0 C1 C:B12301 2.8 71.8 1.0 C4 C:B12301 2.8 74.2 1.0 C6 C:B12301 2.9 75.2 1.0 C16 C:B12301 2.9 65.3 1.0 CE1 C:HIS132 3.1 65.4 1.0 C10 C:B12301 3.1 69.0 1.0 C5 C:B12301 3.2 76.5 1.0 C15 C:B12301 3.3 63.5 1.0 CD2 C:HIS132 3.4 59.1 1.0 C20 C:B12301 3.6 70.0 1.0 C2 C:B12301 3.9 75.0 1.0 C3 C:B12301 4.0 77.2 1.0 C13 C:B12301 4.0 68.2 1.0 C8 C:B12301 4.1 75.0 1.0 C18 C:B12301 4.1 67.9 1.0 C7 C:B12301 4.1 79.3 1.0 C12 C:B12301 4.1 67.7 1.0 C17 C:B12301 4.2 67.8 1.0 ND1 C:HIS132 4.3 65.7 1.0 C26 C:B12301 4.4 75.8 1.0 CG C:HIS132 4.5 59.4 1.0 C35 C:B12301 4.6 78.5 1.0 C48 C:B12301 4.7 78.8 1.0 C37 C:B12301 4.7 80.4 1.0 C53 C:B12301 4.8 61.9 1.0

Cobalt binding site 4 out of 4 in the Anaerobic Light Exposed 2.25 Angstrom Crystal Structure of Cobalamin Binding Domain Belonging to A Light-Dependent Transcription Regulator Ttcarh


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Anaerobic Light Exposed 2.25 Angstrom Crystal Structure of Cobalamin Binding Domain Belonging to A Light-Dependent Transcription Regulator Ttcarh within 5.0Å range: probe atom residue distance (Å) B Occ D:Co301 b:50.2 occ:1.00 CO D:B12301 0.0 50.2 1.0 N21 D:B12301 1.8 54.2 1.0 N23 D:B12301 1.8 52.1 1.0 N22 D:B12301 1.9 57.0 1.0 N24 D:B12301 1.9 49.2 1.0 NE2 D:HIS132 2.1 57.1 1.0 C19 D:B12301 2.7 49.9 1.0 C14 D:B12301 2.8 48.8 1.0 C4 D:B12301 2.8 55.3 1.0 C1 D:B12301 2.8 52.6 1.0 C11 D:B12301 2.8 55.2 1.0 C9 D:B12301 2.8 59.3 1.0 C6 D:B12301 2.9 58.4 1.0 C16 D:B12301 2.9 46.6 1.0 CE1 D:HIS132 3.0 58.1 1.0 C10 D:B12301 3.2 58.4 1.0 C5 D:B12301 3.2 57.4 1.0 C15 D:B12301 3.3 45.9 1.0 CD2 D:HIS132 3.3 57.0 1.0 C20 D:B12301 3.5 47.0 1.0 C2 D:B12301 3.9 55.6 1.0 C3 D:B12301 4.0 57.2 1.0 C13 D:B12301 4.1 48.9 1.0 C18 D:B12301 4.1 50.1 1.0 C12 D:B12301 4.1 52.6 1.0 C8 D:B12301 4.2 62.0 1.0 C7 D:B12301 4.2 62.8 1.0 C17 D:B12301 4.2 48.6 1.0 ND1 D:HIS132 4.2 56.7 1.0 C26 D:B12301 4.3 55.9 1.0 CG D:HIS132 4.4 56.6 1.0 C35 D:B12301 4.7 60.2 1.0 C53 D:B12301 4.8 41.9 1.0 C46 D:B12301 4.8 52.6 1.0 C48 D:B12301 4.9 48.1 1.0 C37 D:B12301 4.9 69.1 1.0 C41 D:B12301 5.0 62.8 1.0 C30 D:B12301 5.0 56.5 1.0 C54 D:B12301 5.0 49.1 1.0

H.Poddar, D.Leys. Anaerobic Light Exposed 2.25 Angstrom Crystal Structure of Cobalamin Binding Domain Belonging to A Light-Dependent Transcription Regulator Ttcarh To Be Published.