Cobalt in PDB 8crn: Streptavidin S112Y Co-Taml Artificial Metalloenzyme

The structure of Streptavidin S112Y Co-Taml Artificial Metalloenzyme, PDB code: 8crn was solved by N.V.Igareta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.96 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	192.51, 57.615, 57.615, 90, 107.42, 90
R / Rfree (%)	18.7 / 20.8

The structure of Streptavidin S112Y Co-Taml Artificial Metalloenzyme also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Cobalt atom in the Streptavidin S112Y Co-Taml Artificial Metalloenzyme (pdb code 8crn). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 4 binding sites of Cobalt where determined in the Streptavidin S112Y Co-Taml Artificial Metalloenzyme, PDB code: 8crn:
Jump to Cobalt binding site number: 1; 2; 3; 4;

Cobalt binding site 1 out of 4 in the Streptavidin S112Y Co-Taml Artificial Metalloenzyme


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Streptavidin S112Y Co-Taml Artificial Metalloenzyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Co201 b:167.8 occ:1.00 CO1 A:VJL201 0.0 167.8 1.0 N4 A:VJL201 1.8 135.5 1.0 N7 A:VJL201 1.9 134.9 1.0 N6 A:VJL201 1.9 157.6 1.0 N5 A:VJL201 1.9 136.4 1.0 C19 A:VJL201 2.7 118.8 1.0 C16 A:VJL201 2.7 127.8 1.0 C18 A:VJL201 2.7 123.4 1.0 C27 A:VJL201 2.7 131.2 1.0 C30 A:VJL201 2.7 116.9 1.0 C15 A:VJL201 2.8 128.1 1.0 C26 A:VJL201 2.8 162.8 1.0 C22 A:VJL201 2.8 138.1 1.0 C20 A:VJL201 3.0 104.8 1.0 C23 A:VJL201 3.1 145.2 1.0 C29 A:VJL201 3.2 108.5 1.0 O3 A:VJL201 3.7 114.8 1.0 C24 A:VJL201 3.7 120.8 1.0 O6 A:VJL201 3.8 84.5 1.0 O4 A:VJL201 3.8 116.3 1.0 O5 A:VJL201 4.0 179.7 1.0 C17 A:VJL201 4.1 101.2 1.0 C21 A:VJL201 4.1 105.3 1.0 C14 A:VJL201 4.2 108.3 1.0 C28 A:VJL201 4.2 125.0 1.0 C25 A:VJL201 4.6 135.1 1.0

Cobalt binding site 2 out of 4 in the Streptavidin S112Y Co-Taml Artificial Metalloenzyme


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Streptavidin S112Y Co-Taml Artificial Metalloenzyme within 5.0Å range: probe atom residue distance (Å) B Occ B:Co201 b:170.7 occ:1.00 CO1 B:VJL201 0.0 170.7 1.0 N7 B:VJL201 1.8 133.5 1.0 N4 B:VJL201 1.9 140.5 1.0 N6 B:VJL201 1.9 119.8 1.0 N5 B:VJL201 1.9 134.2 1.0 C15 B:VJL201 2.7 131.1 1.0 C30 B:VJL201 2.7 114.4 1.0 C16 B:VJL201 2.7 130.8 1.0 C18 B:VJL201 2.8 117.8 1.0 C27 B:VJL201 2.8 111.3 1.0 C19 B:VJL201 2.8 116.2 1.0 C22 B:VJL201 2.8 131.4 1.0 C26 B:VJL201 2.9 122.0 1.0 C23 B:VJL201 3.2 125.9 1.0 O B:HOH322 3.2 74.1 1.0 C20 B:VJL201 3.6 94.3 1.0 O3 B:VJL201 3.6 102.8 1.0 C29 B:VJL201 3.7 91.5 1.0 O6 B:VJL201 3.7 94.8 1.0 C24 B:VJL201 3.8 120.7 1.0 O4 B:VJL201 3.8 124.6 1.0 C14 B:VJL201 3.9 106.6 1.0 O5 B:VJL201 4.0 109.0 1.0 C28 B:VJL201 4.0 97.6 1.0 C17 B:VJL201 4.1 100.1 1.0 C21 B:VJL201 4.2 110.2 1.0 C25 B:VJL201 4.6 115.4 1.0 C13 B:VJL201 4.9 93.5 1.0 C12 B:VJL201 5.0 82.2 1.0

Cobalt binding site 3 out of 4 in the Streptavidin S112Y Co-Taml Artificial Metalloenzyme


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Streptavidin S112Y Co-Taml Artificial Metalloenzyme within 5.0Å range: probe atom residue distance (Å) B Occ C:Co201 b:163.4 occ:1.00 CO1 C:VJL201 0.0 163.4 1.0 N4 C:VJL201 1.8 132.8 1.0 N6 C:VJL201 1.9 147.1 1.0 N7 C:VJL201 1.9 135.8 1.0 N5 C:VJL201 1.9 128.5 1.0 C16 C:VJL201 2.6 121.8 1.0 C15 C:VJL201 2.7 124.5 1.0 C30 C:VJL201 2.8 116.5 1.0 C18 C:VJL201 2.8 121.2 1.0 C26 C:VJL201 2.8 147.7 1.0 C22 C:VJL201 2.8 129.1 1.0 C19 C:VJL201 2.8 120.3 1.0 C27 C:VJL201 2.8 128.9 1.0 C23 C:VJL201 3.0 136.4 1.0 C21 C:VJL201 3.5 103.7 1.0 C25 C:VJL201 3.6 124.8 1.0 O4 C:VJL201 3.7 120.0 1.0 C29 C:VJL201 3.7 118.6 1.0 O3 C:VJL201 3.8 106.7 1.0 C17 C:VJL201 3.9 92.7 1.0 O5 C:VJL201 3.9 155.7 1.0 O6 C:VJL201 3.9 84.1 1.0 C14 C:VJL201 4.0 102.5 1.0 C28 C:VJL201 4.1 114.5 1.0 C20 C:VJL201 4.2 106.9 1.0 C24 C:VJL201 4.5 122.0 1.0 HB2 C:ASN49 4.7 70.3 1.0 C12 C:VJL201 4.9 77.5 1.0 C13 C:VJL201 4.9 91.3 1.0

Cobalt binding site 4 out of 4 in the Streptavidin S112Y Co-Taml Artificial Metalloenzyme


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Streptavidin S112Y Co-Taml Artificial Metalloenzyme within 5.0Å range: probe atom residue distance (Å) B Occ D:Co201 b:169.2 occ:1.00 CO1 D:VJL201 0.0 169.2 1.0 N7 D:VJL201 1.8 132.6 1.0 N4 D:VJL201 1.9 142.5 1.0 N6 D:VJL201 1.9 128.5 1.0 N5 D:VJL201 1.9 135.9 1.0 C30 D:VJL201 2.7 118.9 1.0 C15 D:VJL201 2.7 122.2 1.0 C16 D:VJL201 2.7 128.0 1.0 C27 D:VJL201 2.8 115.7 1.0 C18 D:VJL201 2.8 122.9 1.0 C22 D:VJL201 2.8 138.8 1.0 C26 D:VJL201 2.9 134.0 1.0 C19 D:VJL201 2.9 110.6 1.0 C23 D:VJL201 3.2 134.6 1.0 C20 D:VJL201 3.6 86.7 1.0 C28 D:VJL201 3.7 105.5 1.0 O6 D:VJL201 3.8 108.7 1.0 O4 D:VJL201 3.8 127.1 1.0 O3 D:VJL201 3.9 118.9 1.0 C29 D:VJL201 3.9 104.5 1.0 C14 D:VJL201 4.0 100.8 1.0 O5 D:VJL201 4.0 127.1 1.0 C17 D:VJL201 4.1 97.3 1.0 C21 D:VJL201 4.1 103.7 1.0 C25 D:VJL201 4.3 125.9 1.0 C24 D:VJL201 4.4 124.7 1.0 C13 D:VJL201 4.9 90.9 1.0 C12 D:VJL201 5.0 80.3 1.0

N.V.Igareta, N.V.Igareta. N/A N/A.