Atomistry » Cobalt » PDB 8ebo-8i7q » 8eiy
Atomistry »
  Cobalt »
    PDB 8ebo-8i7q »
      8eiy »

Cobalt in PDB 8eiy: Cobalt(II)-Substituted S48T Horse Liver Alcohol Dehydrogenase in Complex with Nadh and N-Cyclohexylformamide

Enzymatic activity of Cobalt(II)-Substituted S48T Horse Liver Alcohol Dehydrogenase in Complex with Nadh and N-Cyclohexylformamide

All present enzymatic activity of Cobalt(II)-Substituted S48T Horse Liver Alcohol Dehydrogenase in Complex with Nadh and N-Cyclohexylformamide:
1.1.1.1;

Protein crystallography data

The structure of Cobalt(II)-Substituted S48T Horse Liver Alcohol Dehydrogenase in Complex with Nadh and N-Cyclohexylformamide, PDB code: 8eiy was solved by C.Zheng, I.I.Mathews, S.G.Boxer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.09 / 2.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 55.1, 71.54, 92.44, 90, 102.95, 90
R / Rfree (%) 20.8 / 26.3

Other elements in 8eiy:

The structure of Cobalt(II)-Substituted S48T Horse Liver Alcohol Dehydrogenase in Complex with Nadh and N-Cyclohexylformamide also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Cobalt(II)-Substituted S48T Horse Liver Alcohol Dehydrogenase in Complex with Nadh and N-Cyclohexylformamide (pdb code 8eiy). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Cobalt(II)-Substituted S48T Horse Liver Alcohol Dehydrogenase in Complex with Nadh and N-Cyclohexylformamide, PDB code: 8eiy:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 8eiy

Go back to Cobalt Binding Sites List in 8eiy
Cobalt binding site 1 out of 2 in the Cobalt(II)-Substituted S48T Horse Liver Alcohol Dehydrogenase in Complex with Nadh and N-Cyclohexylformamide


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Cobalt(II)-Substituted S48T Horse Liver Alcohol Dehydrogenase in Complex with Nadh and N-Cyclohexylformamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co401

b:79.5
occ:1.00
NE2 A:HIS67 2.1 61.6 1.0
SG A:CYS174 2.2 59.6 1.0
SG A:CYS46 2.3 77.5 1.0
OG1 A:THR48 3.0 63.1 1.0
CD2 A:HIS67 3.0 51.6 1.0
CE1 A:HIS67 3.2 61.2 1.0
CB A:CYS46 3.2 65.6 1.0
C5N A:NAI403 3.2 57.4 1.0
CB A:THR48 3.6 58.1 1.0
CB A:CYS174 3.7 56.7 1.0
C6N A:NAI403 4.0 57.7 1.0
C4N A:NAI403 4.2 59.4 1.0
CG A:HIS67 4.2 59.9 1.0
ND1 A:HIS67 4.2 59.1 1.0
CG2 A:THR48 4.5 57.4 1.0
CA A:CYS46 4.7 64.7 1.0
N A:THR48 4.7 63.3 1.0
CA A:THR48 4.8 56.9 1.0
OE1 A:GLU68 4.8 60.6 1.0
NH2 A:ARG369 4.9 67.5 1.0
CA A:CYS174 5.0 59.1 1.0

Cobalt binding site 2 out of 2 in 8eiy

Go back to Cobalt Binding Sites List in 8eiy
Cobalt binding site 2 out of 2 in the Cobalt(II)-Substituted S48T Horse Liver Alcohol Dehydrogenase in Complex with Nadh and N-Cyclohexylformamide


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Cobalt(II)-Substituted S48T Horse Liver Alcohol Dehydrogenase in Complex with Nadh and N-Cyclohexylformamide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co401

b:76.9
occ:1.00
NE2 B:HIS67 2.1 60.4 1.0
SG B:CYS174 2.2 58.1 1.0
SG B:CYS46 2.3 68.0 1.0
O9 B:CXF404 2.4 66.2 1.0
CD2 B:HIS67 3.0 52.9 1.0
CB B:CYS46 3.1 61.8 1.0
CE1 B:HIS67 3.1 54.3 1.0
C7 B:CXF404 3.1 68.4 1.0
C5N B:NAI403 3.4 58.2 1.0
CB B:CYS174 3.6 57.9 1.0
OG1 B:THR48 3.6 52.8 1.0
C6N B:NAI403 3.9 57.0 1.0
CB B:THR48 3.9 52.6 1.0
CG B:HIS67 4.2 56.2 1.0
ND1 B:HIS67 4.2 52.7 1.0
C4N B:NAI403 4.3 61.3 1.0
NH2 B:ARG369 4.4 67.6 1.0
N8 B:CXF404 4.4 63.0 1.0
OE2 B:GLU68 4.4 68.1 1.0
CG B:GLU68 4.4 59.9 1.0
CA B:CYS46 4.5 59.1 1.0
CG2 B:THR48 4.8 53.4 1.0
N B:GLY175 4.8 58.8 1.0
N B:THR48 4.8 53.0 1.0
CA B:CYS174 4.9 63.0 1.0
CD B:GLU68 4.9 67.2 1.0

Reference:

C.Zheng, I.I.Mathews, S.G.Boxer. Structure of Cobalt(II)-Substituted S48T Horse Liver Alcohol Dehydrogenase at 2.55 Angstroms Resolution To Be Published.
Page generated: Tue Jul 30 19:51:35 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy