Cobalt in PDB 8ew7: Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2
Protein crystallography data
The structure of Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2, PDB code: 8ew7
was solved by
M.Gucwa,
D.R.Cooper,
A.J.Stewart,
W.Minor,
Center For Structural Genomicsof Infectious Diseases (Csgid),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
37.28 /
3.30
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
166.104,
38.301,
96.719,
90,
105.04,
90
|
R / Rfree (%)
|
16.7 /
27.4
|
Cobalt Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Cobalt atom in the Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2
(pdb code 8ew7). This binding sites where shown within
5.0 Angstroms radius around Cobalt atom.
In total 11 binding sites of Cobalt where determined in the
Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2, PDB code: 8ew7:
Jump to Cobalt binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Cobalt binding site 1 out
of 11 in 8ew7
Go back to
Cobalt Binding Sites List in 8ew7
Cobalt binding site 1 out
of 11 in the Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 1 of Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co602
b:117.3
occ:1.00
|
OD2
|
A:ASP249
|
1.9
|
77.2
|
1.0
|
NE2
|
A:HIS67
|
2.2
|
55.9
|
1.0
|
CG
|
A:ASP249
|
3.0
|
76.9
|
1.0
|
CD2
|
A:HIS67
|
3.1
|
54.4
|
1.0
|
CE1
|
A:HIS67
|
3.1
|
54.2
|
1.0
|
OD1
|
A:ASP249
|
3.7
|
66.1
|
1.0
|
OE2
|
A:GLU252
|
4.0
|
74.6
|
1.0
|
CB
|
A:ASP249
|
4.1
|
80.4
|
1.0
|
ND1
|
A:HIS67
|
4.2
|
51.9
|
1.0
|
CG
|
A:HIS67
|
4.2
|
52.9
|
1.0
|
CB
|
A:GLU252
|
4.6
|
66.6
|
1.0
|
CB
|
A:LEU251
|
5.0
|
46.2
|
1.0
|
|
Cobalt binding site 2 out
of 11 in 8ew7
Go back to
Cobalt Binding Sites List in 8ew7
Cobalt binding site 2 out
of 11 in the Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 2 of Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co604
b:116.1
occ:1.00
|
NE2
|
A:HIS9
|
1.9
|
67.5
|
1.0
|
O
|
A:HOH712
|
2.0
|
61.9
|
1.0
|
OD2
|
A:ASP13
|
2.0
|
58.4
|
1.0
|
O
|
A:HOH710
|
2.1
|
40.2
|
1.0
|
O
|
A:HOH719
|
2.1
|
32.9
|
1.0
|
O
|
A:HOH709
|
2.4
|
11.6
|
1.0
|
CE1
|
A:HIS9
|
2.8
|
68.8
|
1.0
|
CD2
|
A:HIS9
|
2.9
|
66.7
|
1.0
|
CG
|
A:ASP13
|
3.2
|
55.3
|
1.0
|
OD1
|
A:ASP13
|
3.7
|
53.7
|
1.0
|
ND1
|
A:HIS9
|
3.9
|
70.3
|
1.0
|
CG
|
A:HIS9
|
3.9
|
68.3
|
1.0
|
CB
|
A:ASP13
|
4.4
|
51.8
|
1.0
|
O
|
A:HIS9
|
4.7
|
64.7
|
1.0
|
|
Cobalt binding site 3 out
of 11 in 8ew7
Go back to
Cobalt Binding Sites List in 8ew7
Cobalt binding site 3 out
of 11 in the Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 3 of Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co607
b:118.8
occ:1.00
|
OE1
|
A:GLU244
|
2.1
|
79.3
|
1.0
|
ND1
|
A:HIS247
|
2.7
|
92.8
|
1.0
|
CB
|
A:ASP249
|
3.0
|
80.4
|
1.0
|
CE1
|
A:HIS247
|
3.3
|
89.3
|
1.0
|
CD
|
A:GLU244
|
3.4
|
71.4
|
1.0
|
N
|
A:ASP249
|
4.0
|
66.0
|
1.0
|
CG
|
A:HIS247
|
4.0
|
83.5
|
1.0
|
OD2
|
A:ASP249
|
4.1
|
77.2
|
1.0
|
CA
|
A:ASP249
|
4.1
|
74.8
|
1.0
|
CG
|
A:ASP249
|
4.1
|
76.9
|
1.0
|
OE2
|
A:GLU244
|
4.2
|
74.2
|
1.0
|
CG
|
A:GLU244
|
4.3
|
64.6
|
1.0
|
O
|
A:GLU244
|
4.3
|
48.7
|
1.0
|
OE2
|
A:GLU252
|
4.5
|
74.6
|
1.0
|
NE2
|
A:HIS247
|
4.5
|
88.1
|
1.0
|
CB
|
A:HIS247
|
4.6
|
75.2
|
1.0
|
CB
|
A:GLU252
|
4.7
|
66.6
|
1.0
|
O
|
A:ASP249
|
4.7
|
71.9
|
1.0
|
CD
|
A:GLU252
|
4.9
|
72.7
|
1.0
|
CD2
|
A:HIS247
|
4.9
|
87.3
|
1.0
|
C
|
A:ASP249
|
4.9
|
74.4
|
1.0
|
|
Cobalt binding site 4 out
of 11 in 8ew7
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Cobalt Binding Sites List in 8ew7
Cobalt binding site 4 out
of 11 in the Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 4 of Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co608
b:99.2
occ:1.00
|
OE1
|
A:GLU252
|
1.9
|
65.7
|
1.0
|
OE2
|
A:GLU244
|
2.7
|
74.2
|
1.0
|
O
|
A:HOH717
|
2.8
|
8.4
|
1.0
|
CD
|
A:GLU252
|
3.1
|
72.7
|
1.0
|
CD
|
A:GLU244
|
3.7
|
71.4
|
1.0
|
OD2
|
A:ASP256
|
3.8
|
60.6
|
1.0
|
CG
|
A:GLU252
|
3.8
|
71.4
|
1.0
|
OE2
|
A:GLU252
|
4.1
|
74.6
|
1.0
|
OD1
|
A:ASP256
|
4.2
|
60.7
|
1.0
|
CG
|
A:GLU244
|
4.4
|
64.6
|
1.0
|
CG
|
A:ASP256
|
4.4
|
61.8
|
1.0
|
OE1
|
A:GLU244
|
4.5
|
79.3
|
1.0
|
CE
|
A:LYS240
|
4.7
|
84.3
|
1.0
|
CB
|
A:GLU252
|
5.0
|
66.6
|
1.0
|
|
Cobalt binding site 5 out
of 11 in 8ew7
Go back to
Cobalt Binding Sites List in 8ew7
Cobalt binding site 5 out
of 11 in the Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 5 of Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co609
b:53.8
occ:1.00
|
NE2
|
A:HIS128
|
2.5
|
43.5
|
1.0
|
O
|
A:HOH720
|
3.1
|
2.5
|
1.0
|
CD2
|
A:HIS128
|
3.4
|
41.5
|
1.0
|
CE1
|
A:HIS128
|
3.5
|
43.0
|
1.0
|
CG
|
A:HIS128
|
4.5
|
40.6
|
1.0
|
ND1
|
A:HIS128
|
4.5
|
42.0
|
1.0
|
|
Cobalt binding site 6 out
of 11 in 8ew7
Go back to
Cobalt Binding Sites List in 8ew7
Cobalt binding site 6 out
of 11 in the Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 6 of Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co610
b:58.9
occ:1.00
|
OD2
|
A:ASP471
|
3.2
|
39.2
|
1.0
|
OD1
|
A:ASP471
|
3.3
|
40.8
|
1.0
|
CG
|
A:ASP471
|
3.6
|
41.0
|
1.0
|
CD
|
A:ARG472
|
3.8
|
47.0
|
1.0
|
CG
|
A:ARG472
|
4.5
|
46.2
|
1.0
|
NE
|
A:ARG472
|
4.8
|
48.2
|
1.0
|
|
Cobalt binding site 7 out
of 11 in 8ew7
Go back to
Cobalt Binding Sites List in 8ew7
Cobalt binding site 7 out
of 11 in the Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 7 of Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co611
b:79.1
occ:1.00
|
NE2
|
A:HIS440
|
2.0
|
48.9
|
1.0
|
CE1
|
A:HIS440
|
2.9
|
50.3
|
1.0
|
CD2
|
A:HIS440
|
3.1
|
47.6
|
1.0
|
ND1
|
A:HIS440
|
4.0
|
49.1
|
1.0
|
CG
|
A:HIS440
|
4.2
|
47.0
|
1.0
|
SG
|
A:CYS448
|
4.8
|
36.6
|
1.0
|
CD
|
A:LYS444
|
4.9
|
69.2
|
1.0
|
|
Cobalt binding site 8 out
of 11 in 8ew7
Go back to
Cobalt Binding Sites List in 8ew7
Cobalt binding site 8 out
of 11 in the Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 8 of Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co613
b:102.3
occ:1.00
|
OE1
|
A:GLU57
|
2.3
|
59.5
|
1.0
|
ND1
|
A:HIS3
|
2.4
|
125.4
|
1.0
|
O
|
A:HOH706
|
2.5
|
43.6
|
1.0
|
OE2
|
A:GLU57
|
2.7
|
73.6
|
1.0
|
CD
|
A:GLU57
|
2.7
|
63.7
|
1.0
|
N
|
A:HIS3
|
2.7
|
111.6
|
1.0
|
CE1
|
A:HIS3
|
2.8
|
119.8
|
1.0
|
CG
|
A:HIS3
|
3.3
|
124.8
|
1.0
|
NE2
|
A:HIS3
|
3.8
|
125.4
|
1.0
|
CA
|
A:HIS3
|
3.8
|
106.7
|
1.0
|
CB
|
A:HIS3
|
4.0
|
113.7
|
1.0
|
CD2
|
A:HIS3
|
4.0
|
128.2
|
1.0
|
N
|
A:LYS4
|
4.0
|
88.9
|
1.0
|
CG
|
A:GLU57
|
4.1
|
62.3
|
1.0
|
C
|
A:HIS3
|
4.5
|
93.9
|
1.0
|
NZ
|
A:LYS4
|
4.8
|
97.5
|
1.0
|
CG
|
A:LYS4
|
4.9
|
95.2
|
1.0
|
|
Cobalt binding site 9 out
of 11 in 8ew7
Go back to
Cobalt Binding Sites List in 8ew7
Cobalt binding site 9 out
of 11 in the Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 9 of Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co614
b:68.0
occ:1.00
|
NE2
|
A:HIS146
|
2.4
|
26.8
|
1.0
|
CE1
|
A:HIS146
|
3.1
|
26.9
|
1.0
|
CD2
|
A:HIS146
|
3.5
|
26.9
|
1.0
|
CG
|
A:LYS190
|
3.8
|
39.3
|
1.0
|
CD
|
A:LYS190
|
4.3
|
43.3
|
1.0
|
ND1
|
A:HIS146
|
4.3
|
26.0
|
1.0
|
CG
|
A:HIS146
|
4.6
|
27.1
|
1.0
|
NZ
|
A:LYS190
|
5.0
|
46.0
|
1.0
|
|
Cobalt binding site 10 out
of 11 in 8ew7
Go back to
Cobalt Binding Sites List in 8ew7
Cobalt binding site 10 out
of 11 in the Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 10 of Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co615
b:85.1
occ:1.00
|
OE2
|
A:GLU311
|
2.3
|
95.6
|
1.0
|
NE2
|
A:HIS367
|
3.0
|
84.3
|
1.0
|
CD
|
A:GLU311
|
3.0
|
99.4
|
1.0
|
OE1
|
A:GLU311
|
3.1
|
100.0
|
1.0
|
CD2
|
A:HIS367
|
3.4
|
81.4
|
1.0
|
CE1
|
A:HIS367
|
4.2
|
84.4
|
1.0
|
OE1
|
A:GLU368
|
4.3
|
82.4
|
1.0
|
CG
|
A:GLU311
|
4.5
|
96.3
|
1.0
|
CG
|
A:HIS367
|
4.7
|
80.2
|
1.0
|
|
Reference:
D.Wu,
I.G.Shabalin,
M.P.Czub,
S.Arya,
U.Schwarz-Linek,
C.A.Blindauer,
D.R.Cooper,
M.Gucwa,
W.Minor,
A.J.Stewart.
Human Serum Albumin with Cobalt (II) and Myristic Acid To Be Published.
Page generated: Tue Jul 30 19:51:34 2024
|