Cobalt in PDB 8ey5: Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 3

Protein crystallography data

The structure of Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 3, PDB code: 8ey5 was solved by M.Gucwa, D.R.Cooper, A.J.Stewart, W.Minor, Center For Structural Genomicsof Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.18 / 3.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 185.966, 38.548, 93.409, 90, 103.75, 90
R / Rfree (%) 20.4 / 29.5

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 3 (pdb code 8ey5). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 5 binding sites of Cobalt where determined in the Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 3, PDB code: 8ey5:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5;

Cobalt binding site 1 out of 5 in 8ey5

Go back to Cobalt Binding Sites List in 8ey5
Cobalt binding site 1 out of 5 in the Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 3


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co604

b:139.4
occ:1.00
O A:HOH705 1.9 60.3 1.0
NE2 A:HIS9 2.0 87.0 1.0
O A:HOH721 2.3 46.8 1.0
CE1 A:HIS9 2.5 89.7 1.0
OD2 A:ASP13 2.7 77.2 1.0
CD2 A:HIS9 3.3 83.0 1.0
ND1 A:HIS9 3.8 87.2 1.0
CG A:ASP13 3.8 75.7 1.0
CG A:HIS9 4.1 83.3 1.0
OD1 A:ASP13 4.2 79.2 1.0
OD1 A:ASP1 4.5 111.7 1.0
NE2 A:HIS3 4.6 108.2 1.0
OD2 A:ASP1 4.6 102.1 1.0
CG A:ASP1 5.0 109.3 1.0

Cobalt binding site 2 out of 5 in 8ey5

Go back to Cobalt Binding Sites List in 8ey5
Cobalt binding site 2 out of 5 in the Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 3


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co607

b:95.1
occ:1.00
O A:HOH710 2.2 65.8 1.0
OD1 A:ASP256 2.4 54.5 1.0
O A:HOH702 2.4 37.4 1.0
O A:HOH720 2.5 25.6 1.0
CG A:ASP256 3.4 51.8 1.0
OD2 A:ASP256 3.6 51.8 1.0
O A:GLU252 4.6 52.4 1.0
OE1 A:GLU252 4.7 66.0 1.0
CB A:ASP256 4.8 49.2 1.0
CG A:GLU244 4.9 51.9 1.0

Cobalt binding site 3 out of 5 in 8ey5

Go back to Cobalt Binding Sites List in 8ey5
Cobalt binding site 3 out of 5 in the Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 3


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co609

b:74.5
occ:1.00
NE2 A:HIS128 2.2 65.0 1.0
CE1 A:HIS128 3.1 64.8 1.0
CD2 A:HIS128 3.1 62.3 1.0
ND1 A:HIS128 4.1 62.1 1.0
CG A:HIS128 4.2 60.3 1.0

Cobalt binding site 4 out of 5 in 8ey5

Go back to Cobalt Binding Sites List in 8ey5
Cobalt binding site 4 out of 5 in the Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 3


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co610

b:80.2
occ:1.00
OD2 A:ASP471 3.3 68.1 1.0
OD1 A:ASP471 3.4 68.1 1.0
CG A:ASP471 3.7 67.8 1.0
CD A:ARG472 5.0 62.4 1.0

Cobalt binding site 5 out of 5 in 8ey5

Go back to Cobalt Binding Sites List in 8ey5
Cobalt binding site 5 out of 5 in the Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 3


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 5 of Human Serum Albumin with Cobalt (II) and Myristic Acid - Crystal 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co611

b:75.9
occ:1.00
NE2 A:HIS440 3.2 61.3 1.0
CE A:LYS444 3.4 63.4 1.0
SG A:CYS448 3.5 53.3 1.0
CE1 A:HIS440 3.6 63.4 1.0
NZ A:LYS444 3.8 62.2 1.0
CE2 A:TYR452 4.4 55.6 1.0
CB A:CYS448 4.4 51.2 1.0
CD2 A:HIS440 4.4 60.2 1.0
OH A:TYR452 4.6 60.2 1.0
CD A:LYS444 4.7 61.9 1.0
ND1 A:HIS440 4.8 63.9 1.0
CE A:LYS436 4.8 62.2 1.0
CG A:LYS444 4.9 63.4 1.0
CA A:CYS448 5.0 49.1 1.0

Reference:

D.Wu, I.G.Shabalin, M.P.Czub, S.Arya, U.Schwarrz-Linek, C.A.Blindauer, D.R.Cooper, M.Gucwa, W.Minor, A.J.Stewart. Human Serum Albumin with Cobalt (II) and Myristic Acid To Be Published.
Page generated: Tue Apr 4 23:07:59 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy