Cobalt in PDB 8sa4: Adenosylcobalamin-Bound Riboswitch Dimer, Form 3

The binding sites of Cobalt atom in the Adenosylcobalamin-Bound Riboswitch Dimer, Form 3 (pdb code 8sa4). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Adenosylcobalamin-Bound Riboswitch Dimer, Form 3, PDB code: 8sa4:

Cobalt binding site 1 out of 1 in the Adenosylcobalamin-Bound Riboswitch Dimer, Form 3


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Adenosylcobalamin-Bound Riboswitch Dimer, Form 3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Co301 b:55.5 occ:1.00 CO A:B1Z301 0.0 55.5 1.0 N24 A:B1Z301 1.8 55.5 1.0 N21 A:B1Z301 1.8 55.5 1.0 N23 A:B1Z301 1.9 55.5 1.0 N22 A:B1Z301 1.9 55.5 1.0 N3B A:B1Z301 2.3 55.5 1.0 C9 A:B1Z301 2.7 55.5 1.0 C14 A:B1Z301 2.8 55.5 1.0 C19 A:B1Z301 2.8 55.5 1.0 C11 A:B1Z301 2.8 55.5 1.0 C4 A:B1Z301 2.8 55.5 1.0 C5A A:B1Z301 2.8 55.5 1.0 C6 A:B1Z301 2.8 55.5 1.0 C16 A:B1Z301 2.8 55.5 1.0 C1 A:B1Z301 2.9 55.5 1.0 C10 A:B1Z301 3.1 55.5 1.0 C2B A:B1Z301 3.2 55.5 1.0 C15 A:B1Z301 3.2 55.5 1.0 C5 A:B1Z301 3.2 55.5 1.0 C9B A:B1Z301 3.3 55.5 1.0 C20 A:B1Z301 3.5 55.5 1.0 C4A A:B1Z301 3.7 55.5 1.0 C4B A:B1Z301 3.8 55.5 1.0 C18 A:B1Z301 4.0 55.5 1.0 C8 A:B1Z301 4.1 55.5 1.0 C3 A:B1Z301 4.1 55.5 1.0 C12 A:B1Z301 4.1 55.5 1.0 C13 A:B1Z301 4.1 55.5 1.0 C17 A:B1Z301 4.1 55.5 1.0 C2 A:B1Z301 4.2 55.5 1.0 C7 A:B1Z301 4.2 55.5 1.0 O6A A:B1Z301 4.2 55.5 1.0 N1B A:B1Z301 4.4 55.5 1.0 C35 A:B1Z301 4.5 55.5 1.0 C8B A:B1Z301 4.5 55.5 1.0 C53 A:B1Z301 4.5 55.5 1.0 C26 A:B1Z301 4.7 55.5 1.0 C47 A:B1Z301 4.8 55.5 1.0 C41 A:B1Z301 4.8 55.5 1.0 C37 A:B1Z301 4.8 55.5 1.0 C54 A:B1Z301 4.9 55.5 1.0

J.Ding, J.C.Deme, J.R.Stagno, P.Yu, S.M.Lea, Y.X.Wang. Capturing Heterogeneous Conformers of Cobalamin Riboswitch By Cryo-Em Nucleic Acids Res. 2023.
ISSN: ESSN 1362-4962