Cobalt in PDB 8t0q: Open State of Lysine 5,6-Aminomutase From Thermoanaerobacter Tengcongensis

The binding sites of Cobalt atom in the Open State of Lysine 5,6-Aminomutase From Thermoanaerobacter Tengcongensis (pdb code 8t0q). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Open State of Lysine 5,6-Aminomutase From Thermoanaerobacter Tengcongensis, PDB code: 8t0q:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Open State of Lysine 5,6-Aminomutase From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Open State of Lysine 5,6-Aminomutase From Thermoanaerobacter Tengcongensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Co401 b:20.0 occ:1.00 CO A:B12401 0.0 20.0 1.0 N21 A:B12401 1.8 20.0 1.0 N23 A:B12401 1.8 20.0 1.0 N24 A:B12401 1.9 20.0 1.0 N22 A:B12401 1.9 20.0 1.0 H5'1 C:5AD601 2.1 94.0 1.0 C5' C:5AD601 2.2 93.5 1.0 H5'2 C:5AD601 2.4 94.4 1.0 C4 A:B12401 2.7 20.0 1.0 C14 A:B12401 2.7 20.0 1.0 C1 A:B12401 2.8 20.0 1.0 C9 A:B12401 2.8 20.0 1.0 C11 A:B12401 2.8 20.0 1.0 C16 A:B12401 2.8 20.0 1.0 C6 A:B12401 2.8 20.0 1.0 C19 A:B12401 2.8 20.0 1.0 NE2 A:HIS133 2.8 94.8 1.0 C15 A:B12401 3.2 20.0 1.0 C5 A:B12401 3.2 20.0 1.0 C10 A:B12401 3.2 20.0 1.0 H202 A:B12401 3.2 20.0 1.0 H91 A:B12401 3.4 20.0 1.0 C20 A:B12401 3.4 20.0 1.0 H203 A:B12401 3.4 20.0 1.0 C4' C:5AD601 3.7 91.6 1.0 CE1 A:HIS133 3.7 93.3 1.0 CD2 A:HIS133 3.8 92.0 1.0 H4' C:5AD601 3.9 93.5 1.0 C18 A:B12401 3.9 20.0 1.0 C3 A:B12401 3.9 20.0 1.0 C2 A:B12401 4.0 20.0 1.0 C17 A:B12401 4.0 20.0 1.0 C8 A:B12401 4.0 20.0 1.0 C7 A:B12401 4.0 20.0 1.0 C13 A:B12401 4.1 20.0 1.0 C12 A:B12401 4.1 20.0 1.0 H10 A:B12401 4.2 20.0 1.0 H261 A:B12401 4.2 20.0 1.0 H371 A:B12401 4.3 20.0 1.0 H422 A:B12401 4.4 20.0 1.0 H262 A:B12401 4.4 20.0 1.0 H201 A:B12401 4.4 20.0 1.0 H551 A:B12401 4.4 20.0 1.0 H18 A:B12401 4.4 20.0 1.0 C26 A:B12401 4.5 20.0 1.0 H8 A:B12401 4.5 20.0 1.0 H3' C:5AD601 4.5 95.5 1.0 HO3' C:5AD601 4.6 94.5 1.0 C3' C:5AD601 4.6 103.9 1.0 O4' C:5AD601 4.6 83.5 1.0 H463 A:B12401 4.6 20.0 1.0 H302 A:B12401 4.6 20.0 1.0 C53 A:B12401 4.6 20.0 1.0 C55 A:B12401 4.6 20.0 1.0 C35 A:B12401 4.6 20.0 1.0 H542 A:B12401 4.6 20.0 1.0 H3 A:B12401 4.7 20.0 1.0 H552 A:B12401 4.7 20.0 1.0 H481 A:B12401 4.7 20.0 1.0 C30 A:B12401 4.7 20.0 1.0 C37 A:B12401 4.7 20.0 1.0 H13 A:B12401 4.8 20.0 1.0 H601 A:B12401 4.8 20.0 1.0 ND1 A:HIS133 4.8 92.6 1.0 H471 A:B12401 4.8 20.0 1.0 H301 A:B12401 4.8 20.0 1.0 C48 A:B12401 4.8 20.0 1.0 CG A:HIS133 4.8 89.9 1.0 C60 A:B12401 4.9 20.0 1.0 H421 A:B12401 4.9 20.0 1.0 H482 A:B12401 4.9 20.0 1.0 C54 A:B12401 4.9 20.0 1.0 C42 A:B12401 5.0 20.0 1.0 C46 A:B12401 5.0 20.0 1.0 O3' C:5AD601 5.0 105.7 1.0 C47 A:B12401 5.0 20.0 1.0

Cobalt binding site 2 out of 2 in the Open State of Lysine 5,6-Aminomutase From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Open State of Lysine 5,6-Aminomutase From Thermoanaerobacter Tengcongensis within 5.0Å range: probe atom residue distance (Å) B Occ B:Co401 b:20.0 occ:1.00 CO B:B12401 0.0 20.0 1.0 N21 B:B12401 1.8 20.0 1.0 N23 B:B12401 1.8 20.0 1.0 N24 B:B12401 1.9 20.0 1.0 N22 B:B12401 1.9 20.0 1.0 H5'1 D:5AD601 2.4 136.8 1.0 C5' D:5AD601 2.7 138.8 1.0 C1 B:B12401 2.7 20.0 1.0 C9 B:B12401 2.8 20.0 1.0 C4 B:B12401 2.8 20.0 1.0 C14 B:B12401 2.8 20.0 1.0 C11 B:B12401 2.8 20.0 1.0 C16 B:B12401 2.8 20.0 1.0 C19 B:B12401 2.9 20.0 1.0 C6 B:B12401 2.9 20.0 1.0 NE2 B:HIS133 2.9 135.8 1.0 H202 B:B12401 3.0 20.0 1.0 CE1 B:HIS133 3.1 136.0 1.0 C10 B:B12401 3.1 20.0 1.0 C15 B:B12401 3.2 20.0 1.0 C5 B:B12401 3.3 20.0 1.0 H91 B:B12401 3.3 20.0 1.0 C20 B:B12401 3.3 20.0 1.0 H5'2 D:5AD601 3.5 136.8 1.0 H203 B:B12401 3.7 20.0 1.0 C4' D:5AD601 3.8 138.0 1.0 H4' D:5AD601 3.9 136.5 1.0 C18 B:B12401 4.0 20.0 1.0 C2 B:B12401 4.0 20.0 1.0 C3 B:B12401 4.0 20.0 1.0 C13 B:B12401 4.1 20.0 1.0 C17 B:B12401 4.1 20.0 1.0 C8 B:B12401 4.1 20.0 1.0 CD2 B:HIS133 4.1 132.6 1.0 C12 B:B12401 4.1 20.0 1.0 H541 B:B12401 4.1 20.0 1.0 C7 B:B12401 4.1 20.0 1.0 H3' D:5AD601 4.2 137.3 1.0 H10 B:B12401 4.2 20.0 1.0 ND1 B:HIS133 4.3 134.3 1.0 H201 B:B12401 4.3 20.0 1.0 C3' D:5AD601 4.3 141.7 1.0 H422 B:B12401 4.4 20.0 1.0 O3' D:5AD601 4.4 142.4 1.0 H13 B:B12401 4.5 20.0 1.0 H3 B:B12401 4.5 20.0 1.0 H18 B:B12401 4.5 20.0 1.0 H8 B:B12401 4.5 20.0 1.0 C54 B:B12401 4.7 20.0 1.0 H463 B:B12401 4.7 20.0 1.0 H562 B:B12401 4.7 20.0 1.0 H261 B:B12401 4.7 20.0 1.0 HO3' D:5AD601 4.7 137.1 1.0 C53 B:B12401 4.7 20.0 1.0 H371 B:B12401 4.7 20.0 1.0 C35 B:B12401 4.7 20.0 1.0 CG B:HIS133 4.8 130.8 1.0 C26 B:B12401 4.8 20.0 1.0 H473 B:B12401 4.9 20.0 1.0 H253 B:B12401 4.9 20.0 1.0 H262 B:B12401 5.0 20.0 1.0 C37 B:B12401 5.0 20.0 1.0 H363 B:B12401 5.0 20.0 1.0

S.Tian, P.Voss, K.Pham, D.Toba, M.Liu, N.Das, S.Yachuw, C.Denault, T.Klose, C.Uyeda. Catalysis in Motion: Large-Scale Domain Shift Enables Co-C Bond Homolysis in Lysine 5,6-Aminomutase To Be Published.