Cobalt in PDB 8tct: Structure of 3K-Glch Bound Bacteroides Thetaiotaomicron 3-Keto-Beta- Glucopyranoside-1,2-Lyase BT1

The structure of Structure of 3K-Glch Bound Bacteroides Thetaiotaomicron 3-Keto-Beta- Glucopyranoside-1,2-Lyase BT1, PDB code: 8tct was solved by A.C.Lazarski, L.J.Worrall, N.C.J.Strynadka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.69 / 1.86
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	122.287, 122.287, 68.747, 90, 90, 120
R / Rfree (%)	16.8 / 18.3

The binding sites of Cobalt atom in the Structure of 3K-Glch Bound Bacteroides Thetaiotaomicron 3-Keto-Beta- Glucopyranoside-1,2-Lyase BT1 (pdb code 8tct). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Structure of 3K-Glch Bound Bacteroides Thetaiotaomicron 3-Keto-Beta- Glucopyranoside-1,2-Lyase BT1, PDB code: 8tct:

Cobalt binding site 1 out of 1 in the Structure of 3K-Glch Bound Bacteroides Thetaiotaomicron 3-Keto-Beta- Glucopyranoside-1,2-Lyase BT1


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of 3K-Glch Bound Bacteroides Thetaiotaomicron 3-Keto-Beta- Glucopyranoside-1,2-Lyase BT1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Co402 b:119.4 occ:1.00 OD2 A:ASP214 2.3 42.7 1.0 ND1 A:HIS240 2.4 37.9 1.0 O4 A:UC6401 2.5 64.6 0.8 NE2 A:HIS182 3.0 37.8 1.0 CE1 A:HIS240 3.3 36.4 1.0 CG A:ASP214 3.4 42.0 1.0 CG A:HIS240 3.4 35.2 1.0 C5 A:UC6401 3.5 76.7 0.8 O5 A:UC6401 3.5 59.2 0.8 CE1 A:HIS182 3.8 34.0 1.0 CB A:HIS240 3.8 37.1 1.0 CD2 A:HIS182 3.9 33.1 1.0 CD A:LYS242 4.0 47.4 1.0 C6 A:UC6401 4.0 74.8 0.8 OD1 A:ASP214 4.2 40.1 1.0 CB A:GLU273 4.2 35.6 1.0 CD A:GLU273 4.2 62.0 1.0 CG A:GLU273 4.3 40.6 1.0 CB A:ASP214 4.4 35.2 1.0 OE2 A:GLU273 4.4 66.9 1.0 NE2 A:HIS240 4.5 35.4 1.0 OE1 A:GLU273 4.5 61.7 1.0 CD2 A:HIS240 4.6 32.4 1.0 CE A:LYS242 4.6 65.8 1.0 C2 A:UC6401 4.6 61.9 0.8 O3 A:UC6401 4.6 81.6 0.8 CB A:LYS242 4.7 40.9 1.0 CG A:LYS242 4.7 44.3 1.0 C4 A:UC6401 4.7 73.1 0.8 CD1 A:TRP217 4.9 56.7 1.0 ND1 A:HIS182 4.9 37.9 1.0 NE1 A:TRP217 5.0 49.1 1.0 CG A:HIS182 5.0 34.4 1.0

S.A.Nasseri, A.C.Lazarski, I.L.Lemmer, C.Y.Zhang, E.Brencher, H.Chen, L.Sim, D.Panwar, L.Betschart, L.J.Worrall, H.Brumer, N.C.J.Strynadka, S.G.Withers. An Alternative Broad-Specificity Pathway For Glycan Breakdown in Bacteria Nature 2024.
ISSN: ESSN 1476-4687