Cobalt in PDB 8wpd: Complex Structure of Athppd with YH20009

All present enzymatic activity of Complex Structure of Athppd with YH20009:
1.13.11.27;

The structure of Complex Structure of Athppd with YH20009, PDB code: 8wpd was solved by G.-F.Yang, H.-Y.Lin, J.Dong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.71 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	77.725, 84.462, 64.294, 90, 100.52, 90
R / Rfree (%)	20.4 / 23.1

The structure of Complex Structure of Athppd with YH20009 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Cobalt atom in the Complex Structure of Athppd with YH20009 (pdb code 8wpd). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Complex Structure of Athppd with YH20009, PDB code: 8wpd:

Cobalt binding site 1 out of 1 in the Complex Structure of Athppd with YH20009


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Complex Structure of Athppd with YH20009 within 5.0Å range: probe atom residue distance (Å) B Occ A:Co501 b:42.4 occ:1.00 O09 A:X3C502 2.0 44.5 1.0 O15 A:X3C502 2.0 42.4 1.0 OE1 A:GLU394 2.2 37.7 1.0 O A:HOH610 2.2 42.1 1.0 NE2 A:HIS308 2.3 38.7 1.0 NE2 A:HIS226 2.3 42.4 1.0 C07 A:X3C502 3.1 48.2 1.0 CE1 A:HIS308 3.2 41.6 1.0 C10 A:X3C502 3.2 46.8 1.0 CD A:GLU394 3.3 43.6 1.0 CE1 A:HIS226 3.3 39.3 1.0 CD2 A:HIS226 3.3 39.0 1.0 CD2 A:HIS308 3.4 39.8 1.0 C08 A:X3C502 3.6 44.9 1.0 OE2 A:GLU394 3.6 45.5 1.0 C06 A:X3C502 4.3 47.4 1.0 ND1 A:HIS308 4.3 41.3 1.0 ND1 A:HIS226 4.4 39.2 1.0 CG A:HIS226 4.4 35.8 1.0 CG A:HIS308 4.5 38.4 1.0 CG2 A:VAL228 4.5 37.9 1.0 C11 A:X3C502 4.5 46.4 1.0 CB A:ALA310 4.5 37.2 1.0 CE2 A:PHE381 4.6 42.9 1.0 CG A:GLU394 4.6 37.4 1.0 O A:PHE419 4.6 50.6 1.0 CB A:GLU394 4.7 37.6 1.0 CD2 A:PHE419 4.7 43.5 1.0 CB A:PHE419 4.8 47.9 1.0 CZ A:PHE381 4.9 46.9 1.0

G.-F.Yang, H.-Y.Lin, J.Dong. Complex Structure of Athppd with YH20009 To Be Published.