Cobalt in PDB 8x6q: Crystal Structure of OSHSL1 L204F/F298L/I335F Complexed with 2-Acetyl- Cyclohexane-2,4-Dione

The structure of Crystal Structure of OSHSL1 L204F/F298L/I335F Complexed with 2-Acetyl- Cyclohexane-2,4-Dione, PDB code: 8x6q was solved by H.-Y.Lin, J.Dong, G.-F.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.40 / 2.39
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	45.927, 58.894, 140.24, 89.97, 90, 111.98
R / Rfree (%)	24.9 / 29.5

The binding sites of Cobalt atom in the Crystal Structure of OSHSL1 L204F/F298L/I335F Complexed with 2-Acetyl- Cyclohexane-2,4-Dione (pdb code 8x6q). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 4 binding sites of Cobalt where determined in the Crystal Structure of OSHSL1 L204F/F298L/I335F Complexed with 2-Acetyl- Cyclohexane-2,4-Dione, PDB code: 8x6q:
Jump to Cobalt binding site number: 1; 2; 3; 4;

Cobalt binding site 1 out of 4 in the Crystal Structure of OSHSL1 L204F/F298L/I335F Complexed with 2-Acetyl- Cyclohexane-2,4-Dione


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of OSHSL1 L204F/F298L/I335F Complexed with 2-Acetyl- Cyclohexane-2,4-Dione within 5.0Å range: probe atom residue distance (Å) B Occ A:Co402 b:36.9 occ:1.00 NE2 A:HIS282 2.0 22.5 1.0 NE2 A:HIS225 2.2 23.8 1.0 O5 A:AKG403 2.3 25.3 1.0 O2 A:AKG403 2.3 25.1 1.0 OD2 A:ASP227 2.5 31.2 1.0 C2 A:AKG403 2.8 24.4 1.0 CE1 A:HIS282 2.9 21.9 1.0 C1 A:AKG403 2.9 26.7 1.0 CE1 A:HIS225 2.9 24.9 1.0 CD2 A:HIS282 3.0 22.4 1.0 CG A:ASP227 3.3 26.9 1.0 CD2 A:HIS225 3.3 23.6 1.0 OD1 A:ASP227 3.4 27.1 1.0 C01 A:Y8R401 3.9 38.2 1.0 ND1 A:HIS282 4.0 22.8 1.0 ND1 A:HIS225 4.1 19.9 1.0 CG A:HIS282 4.1 22.7 1.0 O1 A:AKG403 4.1 24.5 1.0 C3 A:AKG403 4.2 20.9 1.0 CG A:HIS225 4.3 23.5 1.0 C06 A:Y8R401 4.5 40.0 1.0 C4 A:AKG403 4.7 22.1 1.0 CB A:ASP227 4.7 25.2 1.0 N A:ASP227 4.8 25.3 1.0 C02 A:Y8R401 4.9 38.7 1.0 CA A:ASP227 5.0 25.9 1.0

Cobalt binding site 2 out of 4 in the Crystal Structure of OSHSL1 L204F/F298L/I335F Complexed with 2-Acetyl- Cyclohexane-2,4-Dione


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of OSHSL1 L204F/F298L/I335F Complexed with 2-Acetyl- Cyclohexane-2,4-Dione within 5.0Å range: probe atom residue distance (Å) B Occ B:Co402 b:16.6 occ:1.00 O B:HOH518 1.9 22.5 1.0 NE2 B:HIS225 2.1 23.7 1.0 O5 B:AKG403 2.2 26.5 1.0 NE2 B:HIS282 2.2 22.0 1.0 O1 B:AKG403 2.4 28.8 1.0 OD2 B:ASP227 2.5 25.8 1.0 C2 B:AKG403 2.9 24.0 1.0 C1 B:AKG403 3.0 25.4 1.0 CE1 B:HIS225 3.0 21.2 1.0 OD1 B:ASP227 3.1 23.9 1.0 CD2 B:HIS225 3.1 20.5 1.0 CG B:ASP227 3.1 23.9 1.0 CE1 B:HIS282 3.2 18.6 1.0 CD2 B:HIS282 3.2 19.5 1.0 C01 B:Y8R401 3.9 31.8 1.0 ND1 B:HIS225 4.1 18.0 1.0 O2 B:AKG403 4.2 22.9 1.0 CG B:HIS225 4.2 21.9 1.0 ND1 B:HIS282 4.3 19.4 1.0 CG B:HIS282 4.3 21.6 1.0 C3 B:AKG403 4.4 19.2 1.0 C02 B:Y8R401 4.5 31.2 1.0 CB B:ASP227 4.6 23.8 1.0 C4 B:AKG403 4.8 19.0 1.0 N B:ASP227 4.9 19.9 1.0

Cobalt binding site 3 out of 4 in the Crystal Structure of OSHSL1 L204F/F298L/I335F Complexed with 2-Acetyl- Cyclohexane-2,4-Dione


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Crystal Structure of OSHSL1 L204F/F298L/I335F Complexed with 2-Acetyl- Cyclohexane-2,4-Dione within 5.0Å range: probe atom residue distance (Å) B Occ C:Co402 b:24.3 occ:1.00 NE2 C:HIS282 2.1 23.5 1.0 O5 C:AKG403 2.2 25.6 1.0 NE2 C:HIS225 2.3 20.9 1.0 O2 C:AKG403 2.4 23.9 1.0 OD2 C:ASP227 2.5 26.5 1.0 C2 C:AKG403 2.8 24.8 1.0 CE1 C:HIS282 2.9 21.4 1.0 C1 C:AKG403 3.0 24.7 1.0 CE1 C:HIS225 3.1 20.7 1.0 CD2 C:HIS282 3.2 18.6 1.0 CG C:ASP227 3.2 24.6 1.0 OD1 C:ASP227 3.2 26.9 1.0 CD2 C:HIS225 3.3 21.5 1.0 C01 C:Y8R401 3.9 31.8 1.0 ND1 C:HIS282 4.1 21.1 1.0 CG C:HIS282 4.2 22.2 1.0 O1 C:AKG403 4.2 20.4 1.0 ND1 C:HIS225 4.2 21.5 1.0 C3 C:AKG403 4.3 21.3 1.0 CG C:HIS225 4.3 18.8 1.0 C06 C:Y8R401 4.6 33.0 1.0 CB C:ASP227 4.6 22.9 1.0 C4 C:AKG403 4.7 20.9 1.0 N C:ASP227 4.8 21.7 1.0 C02 C:Y8R401 4.9 31.2 1.0 CA C:ASP227 4.9 24.6 1.0 ND2 C:ASN264 5.0 20.1 1.0

Cobalt binding site 4 out of 4 in the Crystal Structure of OSHSL1 L204F/F298L/I335F Complexed with 2-Acetyl- Cyclohexane-2,4-Dione


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Crystal Structure of OSHSL1 L204F/F298L/I335F Complexed with 2-Acetyl- Cyclohexane-2,4-Dione within 5.0Å range: probe atom residue distance (Å) B Occ D:Co402 b:19.8 occ:1.00 O5 D:AKG403 1.9 24.0 1.0 NE2 D:HIS282 2.1 21.2 1.0 NE2 D:HIS225 2.2 20.9 1.0 OD2 D:ASP227 2.4 27.2 1.0 O1 D:AKG403 2.5 21.6 1.0 C2 D:AKG403 2.7 24.6 1.0 C1 D:AKG403 3.0 24.8 1.0 CE1 D:HIS225 3.0 22.2 1.0 CE1 D:HIS282 3.0 19.1 1.0 O D:HOH551 3.0 21.4 1.0 CD2 D:HIS282 3.2 18.9 1.0 CG D:ASP227 3.2 23.6 1.0 CD2 D:HIS225 3.3 18.8 1.0 OD1 D:ASP227 3.3 23.9 1.0 ND1 D:HIS225 4.1 18.2 1.0 C3 D:AKG403 4.2 20.8 1.0 ND1 D:HIS282 4.2 18.5 1.0 O2 D:AKG403 4.2 20.7 1.0 C01 D:Y8R401 4.2 31.8 1.0 CG D:HIS282 4.3 18.5 1.0 CG D:HIS225 4.3 21.2 1.0 CB D:ASP227 4.7 22.7 1.0 C4 D:AKG403 4.7 19.8 1.0 C02 D:Y8R401 4.8 31.2 1.0 N D:ASP227 4.9 23.3 1.0

J.Dong, X.H.Yu, J.Dong, G.H.Wang, X.L.Wang, D.W.Wang, Y.C.Yan, H.Xiao, B.Q.Ye, H.Y.Lin, G.F.Yang. An Artificially Evolved Gene For Herbicide-Resistant Rice Breeding. Proc.Natl.Acad.Sci.Usa V. 121 85121 2024.
ISSN: ESSN 1091-6490
PubMed: 39133859
DOI: 10.1073/PNAS.2407285121