Cobalt in PDB 8x7d: Crystal Structure of OSHSL1 L204F/F298L/I335F

The structure of Crystal Structure of OSHSL1 L204F/F298L/I335F, PDB code: 8x7d was solved by H.-Y.Lin, J.Dong, G.-F.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.55 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	46.019, 140.474, 58.976, 90, 111.89, 90
R / Rfree (%)	21.1 / 24.8

The binding sites of Cobalt atom in the Crystal Structure of OSHSL1 L204F/F298L/I335F (pdb code 8x7d). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of OSHSL1 L204F/F298L/I335F, PDB code: 8x7d:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure of OSHSL1 L204F/F298L/I335F


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of OSHSL1 L204F/F298L/I335F within 5.0Å range: probe atom residue distance (Å) B Occ A:Co401 b:25.5 occ:1.00 NE2 A:HIS282 2.1 19.9 1.0 NE2 A:HIS225 2.1 30.1 1.0 O5 A:AKG402 2.2 31.8 1.0 OD1 A:ASP227 2.3 22.3 1.0 O2 A:AKG402 2.3 35.4 1.0 C2 A:AKG402 2.8 31.1 1.0 C1 A:AKG402 2.9 35.8 1.0 CE1 A:HIS225 3.0 23.9 1.0 CD2 A:HIS282 3.0 23.1 1.0 CG A:ASP227 3.1 27.0 1.0 CD2 A:HIS225 3.2 22.8 1.0 CE1 A:HIS282 3.2 22.8 1.0 OD2 A:ASP227 3.2 32.4 1.0 ND1 A:HIS225 4.1 18.1 1.0 O1 A:AKG402 4.1 37.0 1.0 CG A:HIS282 4.2 22.0 1.0 C3 A:AKG402 4.2 32.6 1.0 CG A:HIS225 4.2 25.5 1.0 ND1 A:HIS282 4.2 27.1 1.0 O5 A:AKG403 4.5 48.7 1.0 CB A:ASP227 4.5 24.8 1.0 N A:ASP227 4.8 21.6 1.0 C4 A:AKG402 4.8 30.3 1.0 CA A:ASP227 4.9 23.9 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure of OSHSL1 L204F/F298L/I335F


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of OSHSL1 L204F/F298L/I335F within 5.0Å range: probe atom residue distance (Å) B Occ B:Co401 b:29.6 occ:1.00 O B:HOH508 2.1 46.1 1.0 O1 B:AKG402 2.2 37.6 1.0 O5 B:AKG402 2.2 37.0 1.0 OD1 B:ASP227 2.2 28.8 1.0 NE2 B:HIS225 2.2 33.1 1.0 NE2 B:HIS282 2.3 31.1 1.0 C2 B:AKG402 2.7 40.0 1.0 C1 B:AKG402 2.8 40.2 1.0 CE1 B:HIS225 3.1 24.5 1.0 CG B:ASP227 3.1 32.7 1.0 CE1 B:HIS282 3.2 28.9 1.0 CD2 B:HIS282 3.3 26.3 1.0 OD2 B:ASP227 3.3 37.0 1.0 CD2 B:HIS225 3.3 30.9 1.0 O2 B:AKG402 4.0 38.3 1.0 C3 B:AKG402 4.1 41.5 1.0 ND1 B:HIS225 4.2 26.4 1.0 ND1 B:HIS282 4.3 26.5 1.0 CG B:HIS282 4.4 28.3 1.0 CG B:HIS225 4.4 30.4 1.0 CB B:ASP227 4.5 32.0 1.0 N B:ASP227 4.8 26.2 1.0 C4 B:AKG402 4.8 40.2 1.0 CA B:ASP227 4.9 27.9 1.0

J.Dong, X.H.Yu, J.Dong, G.H.Wang, X.L.Wang, D.W.Wang, Y.C.Yan, H.Xiao, B.Q.Ye, H.Y.Lin, G.F.Yang. An Artificially Evolved Gene For Herbicide-Resistant Rice Breeding. Proc.Natl.Acad.Sci.Usa V. 121 85121 2024.
ISSN: ESSN 1091-6490
PubMed: 39133859
DOI: 10.1073/PNAS.2407285121