Cobalt in PDB 8xc3: Crystal Structure of ZMHSL1A-Mbq Complex

The structure of Crystal Structure of ZMHSL1A-Mbq Complex, PDB code: 8xc3 was solved by G.-F.Yang, H.-Y.Lin, J.Dong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.63 / 1.79
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	86.58, 54.345, 174.16, 90, 103.96, 90
R / Rfree (%)	19.8 / 23.1

The binding sites of Cobalt atom in the Crystal Structure of ZMHSL1A-Mbq Complex (pdb code 8xc3). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of ZMHSL1A-Mbq Complex, PDB code: 8xc3:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure of ZMHSL1A-Mbq Complex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of ZMHSL1A-Mbq Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Co401 b:21.1 occ:1.00 NE2 A:HIS228 2.1 21.2 1.0 NE2 A:HIS285 2.1 20.4 1.0 O5 A:AKG402 2.2 21.3 1.0 OD1 A:ASP230 2.2 18.8 1.0 O2 A:AKG402 2.2 22.8 1.0 O A:HOH512 2.3 24.5 1.0 C2 A:AKG402 2.8 23.4 1.0 C1 A:AKG402 2.9 25.6 1.0 CE1 A:HIS228 3.0 21.9 1.0 CD2 A:HIS285 3.0 19.2 1.0 CE1 A:HIS285 3.1 22.3 1.0 CG A:ASP230 3.1 23.1 1.0 CD2 A:HIS228 3.1 19.3 1.0 OD2 A:ASP230 3.3 21.8 1.0 O A:HOH704 4.0 32.9 1.0 ND1 A:HIS228 4.1 22.1 1.0 O1 A:AKG402 4.1 24.1 1.0 CG A:HIS285 4.2 20.8 1.0 ND1 A:HIS285 4.2 20.3 1.0 CG A:HIS228 4.2 20.5 1.0 C3 A:AKG402 4.3 19.9 1.0 O A:HOH619 4.3 31.0 1.0 O A:HOH535 4.3 36.2 1.0 CB A:ASP230 4.5 19.9 1.0 CE1 A:PHE301 4.6 22.6 1.0 N A:ASP230 4.8 20.2 1.0 C4 A:AKG402 4.8 20.5 1.0 CA A:ASP230 4.9 20.1 1.0 CZ A:PHE301 5.0 24.9 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure of ZMHSL1A-Mbq Complex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of ZMHSL1A-Mbq Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Co401 b:19.3 occ:1.00 NE2 B:HIS228 2.1 20.3 1.0 O5 B:AKG402 2.1 19.6 1.0 OD1 B:ASP230 2.1 16.6 1.0 O B:HOH514 2.1 24.6 1.0 O1 B:AKG402 2.2 22.6 1.0 NE2 B:HIS285 2.2 19.2 1.0 C2 B:AKG402 2.8 23.7 1.0 C1 B:AKG402 2.8 25.4 1.0 CE1 B:HIS228 2.9 21.3 1.0 CG B:ASP230 3.0 21.9 1.0 CE1 B:HIS285 3.1 22.6 1.0 CD2 B:HIS228 3.1 22.2 1.0 CD2 B:HIS285 3.2 17.7 1.0 OD2 B:ASP230 3.2 18.0 1.0 O B:HOH657 3.9 26.6 1.0 ND1 B:HIS228 4.1 21.7 1.0 O2 B:AKG402 4.1 22.9 1.0 CG B:HIS228 4.2 21.1 1.0 ND1 B:HIS285 4.2 19.5 1.0 O B:HOH562 4.2 26.4 1.0 C3 B:AKG402 4.3 22.0 1.0 CG B:HIS285 4.3 17.8 1.0 O B:HOH586 4.3 30.8 1.0 CB B:ASP230 4.5 19.3 1.0 CE1 B:PHE301 4.5 19.7 1.0 N B:ASP230 4.8 18.8 1.0 C4 B:AKG402 4.8 21.3 1.0 CZ B:PHE301 4.8 21.9 1.0 CA B:ASP230 4.9 20.1 1.0

J.Dong, X.H.Yu, J.Dong, G.H.Wang, X.L.Wang, D.W.Wang, Y.C.Yan, H.Xiao, B.Q.Ye, H.Y.Lin, G.F.Yang. An Artificially Evolved Gene For Herbicide-Resistant Rice Breeding. Proc.Natl.Acad.Sci.Usa V. 121 85121 2024.
ISSN: ESSN 1091-6490
PubMed: 39133859
DOI: 10.1073/PNAS.2407285121