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Cobalt in PDB 8xiv: Production of D-Psicose

Protein crystallography data

The structure of Production of D-Psicose, PDB code: 8xiv was solved by D.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.98 / 1.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 121.056, 121.056, 47.433, 90, 90, 90
R / Rfree (%) 16.2 / 19.6

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Production of D-Psicose (pdb code 8xiv). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Production of D-Psicose, PDB code: 8xiv:

Cobalt binding site 1 out of 1 in 8xiv

Go back to Cobalt Binding Sites List in 8xiv
Cobalt binding site 1 out of 1 in the Production of D-Psicose


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Production of D-Psicose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co402

b:8.6
occ:0.65
OD2 A:ASP217 1.9 9.7 1.0
OE2 A:GLU184 2.0 13.7 1.0
O3 A:FUD401 2.1 19.1 1.0
ND1 A:HIS243 2.2 12.2 1.0
OE1 A:GLU278 2.2 16.3 1.0
O2 A:FUD401 2.3 18.6 1.0
CE1 A:HIS243 3.0 12.8 1.0
C3 A:FUD401 3.0 23.9 1.0
CD A:GLU184 3.0 15.2 1.0
C2 A:FUD401 3.0 19.8 1.0
CD A:GLU278 3.1 16.8 1.0
CG A:ASP217 3.1 9.2 1.0
CG A:HIS243 3.2 10.8 1.0
OE2 A:GLU278 3.4 21.3 1.0
OE1 A:GLU184 3.4 18.5 1.0
CB A:HIS243 3.6 9.0 1.0
CB A:ASP217 3.8 9.2 1.0
O A:HOH548 4.1 20.0 1.0
NE2 A:HIS243 4.1 12.8 1.0
OD1 A:ASP217 4.2 11.1 1.0
C4 A:FUD401 4.2 28.5 1.0
NH1 A:ARG249 4.2 12.6 1.0
CD2 A:HIS243 4.2 13.1 1.0
O4 A:FUD401 4.3 30.5 1.0
CG A:GLU184 4.3 12.0 1.0
CD2 A:HIS220 4.4 8.7 1.0
C1 A:FUD401 4.5 19.1 1.0
NE2 A:HIS220 4.5 8.8 1.0
CG A:GLU278 4.5 15.7 1.0
C5 A:FUD401 4.8 32.3 1.0
CE A:MET215 5.0 13.4 1.0
CB A:GLU278 5.0 13.5 1.0
O A:HOH714 5.0 33.1 1.0

Reference:

D.Guo, D.Guo. N/A N/A.
Page generated: Sat Feb 8 17:38:11 2025

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