Cobalt »
PDB 8xhj-9icb »
8yes »
Cobalt in PDB 8yes: Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate
Enzymatic activity of Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate
All present enzymatic activity of Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate:
2.7.1.156; 2.7.7.62;
2.7.1.156; 2.7.7.62;
Protein crystallography data
The structure of Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate, PDB code: 8yes
was solved by
Y.Nam,
H.Do,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 47.96 / 2.60 |
| Space group | P 2 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 99.213, 102.922, 129.228, 90, 90, 90 |
| R / Rfree (%) | 19.3 / 26.3 |
Cobalt Binding Sites:
The binding sites of Cobalt atom in the Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate
(pdb code 8yes). This binding sites where shown within
5.0 Angstroms radius around Cobalt atom.
In total 6 binding sites of Cobalt where determined in the Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate, PDB code: 8yes:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Cobalt where determined in the Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate, PDB code: 8yes:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5; 6;
Cobalt binding site 1 out of 6 in 8yes
Go back to
Cobalt Binding Sites List in 8yes
Cobalt binding site 1 out
of 6 in the Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 1 of Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate within 5.0Å range:
|
Cobalt binding site 2 out of 6 in 8yes
Go back to
Cobalt Binding Sites List in 8yes
Cobalt binding site 2 out
of 6 in the Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 2 of Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate within 5.0Å range:
|
Cobalt binding site 3 out of 6 in 8yes
Go back to
Cobalt Binding Sites List in 8yes
Cobalt binding site 3 out
of 6 in the Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 3 of Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate within 5.0Å range:
|
Cobalt binding site 4 out of 6 in 8yes
Go back to
Cobalt Binding Sites List in 8yes
Cobalt binding site 4 out
of 6 in the Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 4 of Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate within 5.0Å range:
|
Cobalt binding site 5 out of 6 in 8yes
Go back to
Cobalt Binding Sites List in 8yes
Cobalt binding site 5 out
of 6 in the Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 5 of Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate within 5.0Å range:
|
Cobalt binding site 6 out of 6 in 8yes
Go back to
Cobalt Binding Sites List in 8yes
Cobalt binding site 6 out
of 6 in the Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 6 of Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate within 5.0Å range:
|
Reference:
Y.Nam,
Y.Y.Ahn,
B.M.Kim,
K.Kim,
J.H.Lee,
H.Do.
A Structure-Based Mechanism of Adenosylcobinamide Kinase/Adenosylcobinamide Phosphate Guanylyltransferase (Mpacobu) From Methylocapsa Palsarum. Int.J.Biol.Macromol. V. 280 36021 2024.
ISSN: ISSN 0141-8130
PubMed: 39326622
DOI: 10.1016/J.IJBIOMAC.2024.136021
Page generated: Sat Feb 8 17:38:14 2025
ISSN: ISSN 0141-8130
PubMed: 39326622
DOI: 10.1016/J.IJBIOMAC.2024.136021
Last articles
Zn in 9IRQZn in 9IYX
Zn in 9J8P
Zn in 9IUU
Zn in 9GBF
Zn in 9G2V
Zn in 9G2L
Zn in 9G2X
Zn in 9G2Z
Zn in 9G2K
