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Cobalt in PDB 9cg2: DUF512 Protein From Pyrococcus Furiosus

Protein crystallography data

The structure of DUF512 Protein From Pyrococcus Furiosus, PDB code: 9cg2 was solved by B.Wang, M.I.Radle, O.Peduzzi, A.Solinski, H.L.Knox, J.Cui, R.Maurya, N.Yennawar, S.J.Booker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.24 / 1.96
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.882, 80.454, 98.431, 90, 90, 90
R / Rfree (%) 16.9 / 21.3

Other elements in 9cg2:

The structure of DUF512 Protein From Pyrococcus Furiosus also contains other interesting chemical elements:

Iron (Fe) 4 atoms
Potassium (K) 1 atom

Cobalt Binding Sites:

The binding sites of Cobalt atom in the DUF512 Protein From Pyrococcus Furiosus (pdb code 9cg2). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the DUF512 Protein From Pyrococcus Furiosus, PDB code: 9cg2:

Cobalt binding site 1 out of 1 in 9cg2

Go back to Cobalt Binding Sites List in 9cg2
Cobalt binding site 1 out of 1 in the DUF512 Protein From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of DUF512 Protein From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co402

b:15.3
occ:1.00
CO A:B12402 0.0 15.3 1.0
N21 A:B12402 1.9 17.4 1.0
N24 A:B12402 1.9 17.6 1.0
N23 A:B12402 1.9 16.5 1.0
N22 A:B12402 1.9 13.1 1.0
C5' A:5AD403 2.0 48.7 1.0
C19 A:B12402 2.8 18.4 1.0
C1 A:B12402 2.9 14.5 1.0
C9 A:B12402 2.9 15.8 1.0
C4 A:B12402 2.9 12.8 1.0
C11 A:B12402 2.9 17.3 1.0
C14 A:B12402 3.0 17.4 1.0
C16 A:B12402 3.0 14.0 1.0
C6 A:B12402 3.0 16.4 1.0
C4' A:5AD403 3.2 53.3 1.0
C10 A:B12402 3.3 18.9 1.0
C5 A:B12402 3.3 15.1 1.0
C15 A:B12402 3.4 13.7 1.0
C20 A:B12402 3.4 13.9 1.0
O4' A:5AD403 3.7 63.5 1.0
CD2 A:LEU286 4.1 13.0 1.0
C18 A:B12402 4.1 15.1 1.0
C2 A:B12402 4.2 16.7 1.0
CD1 A:LEU286 4.2 11.7 1.0
C3 A:B12402 4.2 13.2 1.0
C12 A:B12402 4.2 14.7 1.0
C17 A:B12402 4.2 20.3 1.0
C8 A:B12402 4.2 15.3 1.0
C13 A:B12402 4.3 12.3 1.0
C7 A:B12402 4.3 22.6 1.0
CG A:LEU286 4.4 13.0 1.0
C3' A:5AD403 4.5 56.0 1.0
C26 A:B12402 4.7 14.7 1.0
C46 A:B12402 4.7 15.4 1.0
C54 A:B12402 4.8 22.1 1.0
C35 A:B12402 4.8 19.0 1.0
C48 A:B12402 4.9 15.1 1.0
C53 A:B12402 4.9 13.0 1.0
N3 A:5AD403 4.9 51.9 1.0

Reference:

B.Wang, M.I.Radle, O.Peduzzi, A.Solinski, H.L.Knox, J.Cui, R.Maurya, N.Yennawar, S.J.Booker. DUF512 Protein From Pyrococcus Furiosus To Be Published.
Page generated: Sun Jul 13 22:12:30 2025

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