Cobalt in PDB 9d44: Crystal Structure of Co(II)-Bound Polysaccharide Deacetylase From Bacteroides Ovatus

The structure of Crystal Structure of Co(II)-Bound Polysaccharide Deacetylase From Bacteroides Ovatus, PDB code: 9d44 was solved by J.C.Lowenstein, K.J.Mclaughlin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.47 / 1.42
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	69.177, 73.162, 95.424, 90, 90, 90
R / Rfree (%)	16 / 20.1

The binding sites of Cobalt atom in the Crystal Structure of Co(II)-Bound Polysaccharide Deacetylase From Bacteroides Ovatus (pdb code 9d44). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Co(II)-Bound Polysaccharide Deacetylase From Bacteroides Ovatus, PDB code: 9d44:

Cobalt binding site 1 out of 1 in the Crystal Structure of Co(II)-Bound Polysaccharide Deacetylase From Bacteroides Ovatus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Co(II)-Bound Polysaccharide Deacetylase From Bacteroides Ovatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Co507 b:13.4 occ:1.00 O A:HOH636 2.0 17.0 1.0 OD1 A:ASP102 2.1 11.9 1.0 O A:HOH676 2.1 13.6 1.0 O A:HOH991 2.2 18.7 1.0 NE2 A:HIS213 2.2 11.2 1.0 O A:HOH679 2.2 15.1 1.0 CD2 A:HIS213 3.1 10.2 1.0 CG A:ASP102 3.1 11.9 1.0 CE1 A:HIS213 3.2 13.2 1.0 OD2 A:ASP102 3.4 14.8 1.0 O A:HOH1001 4.1 26.1 1.0 NE2 A:HIS337 4.1 16.2 1.0 OD2 A:ASP214 4.1 14.6 1.0 O A:HOH771 4.1 27.8 1.0 OD2 A:ASP101 4.1 11.8 1.0 CB A:ASP101 4.2 11.1 1.0 CG A:HIS213 4.3 11.1 1.0 ND1 A:HIS213 4.3 11.9 1.0 CB A:ASP102 4.5 12.2 1.0 CD2 A:HIS337 4.5 16.1 1.0 CG A:ASP101 4.6 11.8 1.0 N A:ASP102 4.6 9.8 1.0 CA A:ASP102 4.8 9.8 1.0 CA A:PRO253 4.9 14.4 1.0 CB A:PRO253 4.9 15.2 1.0

L.A.Schwartz, J.O.Norman, S.Hasan, O.E.Adamek, E.Dzuong, J.C.Lowenstein, O.G.Yost, B.Sankaran, K.J.Mclaughlin. Carbohydrate Deacetylase Unique to Gut Microbe Bacteroides Reveals Atypical Structure. Biochemistry 2024.
ISSN: ISSN 0006-2960
PubMed: 39663570
DOI: 10.1021/ACS.BIOCHEM.4C00519