Cobalt in PDB 9fzy: Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3A)

Enzymatic activity of Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3A)

All present enzymatic activity of Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3A):
1.2.7.4; 2.3.1.169;

Other elements in 9fzy:

The structure of Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3A) also contains other interesting chemical elements:

Nickel	(Ni)	4 atoms
Iron	(Fe)	28 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3A) (pdb code 9fzy). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3A), PDB code: 9fzy:

Cobalt binding site 1 out of 1 in 9fzy

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Cobalt Binding Sites List in 9fzy

Cobalt binding site 1 out of 1 in the Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3A)

Mono view

Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3A) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
F:Co502 b:142.9 occ:1.00	CO	F:B12502	0.0	142.9	1.0
	N23	F:B12502	1.8	141.7	1.0
	N21	F:B12502	1.9	144.7	1.0
	N24	F:B12502	1.9	143.4	1.0
	N22	F:B12502	1.9	145.9	1.0
	C11	F:B12502	2.8	142.5	1.0
	C9	F:B12502	2.8	146.6	1.0
	C19	F:B12502	2.9	144.6	1.0
	C14	F:B12502	2.9	140.7	1.0
	C4	F:B12502	2.9	146.5	1.0
	C1	F:B12502	2.9	145.8	1.0
	C16	F:B12502	2.9	143.6	1.0
	C6	F:B12502	3.0	147.3	1.0
	OG1	F:THR378	3.1	165.5	1.0
	C10	F:B12502	3.2	144.6	1.0
	C15	F:B12502	3.4	141.3	1.0
	C5	F:B12502	3.4	146.6	1.0
	C20	F:B12502	3.6	145.4	1.0
	CG2	F:THR378	3.9	164.9	1.0
	CB	F:THR378	4.0	165.9	1.0
	C2	F:B12502	4.1	148.9	1.0
	C18	F:B12502	4.1	145.8	1.0
	C12	F:B12502	4.2	141.5	1.0
	C13	F:B12502	4.2	141.2	1.0
	C3	F:B12502	4.2	149.5	1.0
	C8	F:B12502	4.2	148.8	1.0
	C17	F:B12502	4.3	145.1	1.0
	C7	F:B12502	4.3	149.7	1.0
	C26	F:B12502	4.3	151.5	1.0
	O39	F:B12502	4.4	153.9	1.0
	CA	F:THR378	4.5	167.2	1.0
	C38	F:B12502	4.7	152.8	1.0
	CG2	E:VAL183	4.7	108.6	1.0
	C49	F:B12502	4.8	142.0	1.0
	C53	F:B12502	4.9	140.7	1.0
	C35	F:B12502	4.9	147.3	1.0
	C46	F:B12502	4.9	141.4	1.0

Reference:

M.D.Yin, O.N.Lemaire, M.Belhamri, J.G.Rosas-Jimenez, G.Hummer, T.Wagner, B.J.Murphy. Snapshots of Acetyl-Coa Synthesis, the Last Step of CO2 Fixation in the Wood-Ljungdahl Pathway Science 2025.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ADR9672

Page generated: Sun Feb 9 06:50:27 2025

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