Cobalt in PDB 9fzz: Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3B)

Enzymatic activity of Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3B)

All present enzymatic activity of Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3B):
1.2.7.4; 2.3.1.169;

Other elements in 9fzz:

The structure of Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3B) also contains other interesting chemical elements:

Nickel	(Ni)	4 atoms
Iron	(Fe)	28 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3B) (pdb code 9fzz). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3B), PDB code: 9fzz:

Cobalt binding site 1 out of 1 in 9fzz

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Cobalt Binding Sites List in 9fzz

Cobalt binding site 1 out of 1 in the Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3B)

Mono view

Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3B) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
F:Co502 b:161.1 occ:1.00	CO	F:B12502	0.0	161.1	1.0
	N23	F:B12502	1.8	160.1	1.0
	N21	F:B12502	1.9	162.3	1.0
	N24	F:B12502	1.9	162.2	1.0
	N22	F:B12502	1.9	160.9	1.0
	C11	F:B12502	2.8	159.7	1.0
	OG1	F:THR378	2.8	163.4	1.0
	C9	F:B12502	2.9	160.8	1.0
	C19	F:B12502	2.9	163.7	1.0
	C14	F:B12502	2.9	160.9	1.0
	C1	F:B12502	2.9	163.8	1.0
	C4	F:B12502	2.9	162.4	1.0
	C16	F:B12502	3.0	163.5	1.0
	C6	F:B12502	3.0	161.3	1.0
	C10	F:B12502	3.1	159.6	1.0
	C15	F:B12502	3.3	162.5	1.0
	C5	F:B12502	3.4	160.5	1.0
	C20	F:B12502	3.6	163.2	1.0
	CB	F:THR378	3.9	162.6	1.0
	CG2	F:THR378	3.9	163.4	1.0
	C2	F:B12502	4.1	166.5	1.0
	C12	F:B12502	4.1	159.8	1.0
	C18	F:B12502	4.2	166.3	1.0
	C13	F:B12502	4.2	161.1	1.0
	C3	F:B12502	4.2	165.2	1.0
	C8	F:B12502	4.2	163.1	1.0
	C17	F:B12502	4.3	165.8	1.0
	C7	F:B12502	4.3	163.1	1.0
	C26	F:B12502	4.3	171.0	1.0
	O39	F:B12502	4.3	167.0	1.0
	C38	F:B12502	4.7	166.8	1.0
	C46	F:B12502	4.8	159.0	1.0
	C53	F:B12502	4.8	162.8	1.0
	C35	F:B12502	4.9	160.0	1.0
	CA	F:THR378	4.9	161.9	1.0
	C48	F:B12502	5.0	161.9	1.0

Reference:

M.D.Yin, O.N.Lemaire, M.Belhamri, J.G.Rosas-Jimenez, G.Hummer, T.Wagner, B.J.Murphy. Snapshots of Acetyl-Coa Synthesis, the Last Step of CO2 Fixation in the Wood-Ljungdahl Pathway Science 2025.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ADR9672

Page generated: Sun Feb 9 06:50:27 2025

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