Atomistry » Cobalt » PDB 1e31-1hgw » 1gql
Atomistry »
  Cobalt »
    PDB 1e31-1hgw »
      1gql »

Cobalt in PDB 1gql: Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose

Enzymatic activity of Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose

All present enzymatic activity of Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose:
3.2.1.139;

Protein crystallography data

The structure of Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose, PDB code: 1gql was solved by D.Nurizzo, T.Nagy, H.J.Gilbert, G.J.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.67
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 69.256, 74.323, 87.273, 115.15, 92.94, 109.24
R / Rfree (%) 14.6 / 17.2

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose (pdb code 1gql). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 8 binding sites of Cobalt where determined in the Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose, PDB code: 1gql:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Cobalt binding site 1 out of 8 in 1gql

Go back to Cobalt Binding Sites List in 1gql
Cobalt binding site 1 out of 8 in the Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1714

b:17.7
occ:0.50
 OG1 A:THR629 3.0 13.8 1.0
O A:HOH2624 3.1 16.8 1.0
O A:HOH2704 3.3 16.6 1.0
O A:HOH2514 3.5 16.7 1.0
O A:ALA625 3.7 12.2 1.0
CB A:MET502 3.7 12.6 1.0
CB A:THR629 3.7 12.2 1.0
CA A:MET502 3.8 12.1 1.0
CA A:MET626 3.8 11.2 1.0
CG A:MET502 3.8 13.4 1.0
C A:ALA625 3.9 11.9 1.0
N A:MET626 3.9 11.6 1.0
CG A:MET626 4.1 13.3 1.0
CG2 A:THR629 4.2 14.1 1.0
O A:HOH2625 4.3 16.6 1.0
N A:MET502 4.4 13.1 1.0
CB A:ALA625 4.5 12.7 1.0
CB A:MET626 4.5 12.1 1.0
CG1 A:VAL505 4.7 9.5 0.5
O A:HOH2631 4.8 27.8 1.0
O A:HOH2225 4.8 36.7 1.0
CA A:ALA625 4.8 12.1 1.0
C A:MET626 4.9 11.3 1.0
O A:HOH2272 5.0 20.2 1.0

Cobalt binding site 2 out of 8 in 1gql

Go back to Cobalt Binding Sites List in 1gql
Cobalt binding site 2 out of 8 in the Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1715

b:13.8
occ:0.50
 O A:HOH2652 3.0 17.3 1.0
O A:HOH2489 3.0 11.7 1.0
ND2 A:ASN452 3.3 13.2 1.0
CB A:ASN452 3.6 10.0 1.0
CB A:PRO457 3.6 11.9 1.0
CA A:GLY7 3.6 12.7 1.0
CG A:PRO457 3.6 12.5 1.0
CD A:ARG641 3.7 12.9 1.0
NE2 A:GLN460 3.7 15.8 1.0
CG A:ASN452 4.0 12.3 1.0
CA A:PRO457 4.0 11.7 1.0
CG A:ARG641 4.1 11.7 1.0
N A:GLY7 4.1 13.2 1.0
O A:ASP6 4.4 14.8 1.0
CD A:GLN460 4.4 14.4 1.0
C A:ASP6 4.4 15.4 1.0
OE1 A:GLN644 4.4 18.9 1.0
OE1 A:GLN460 4.4 12.9 1.0
CD A:PRO457 4.7 11.5 1.0
C A:GLY7 4.7 12.6 1.0
N A:PRO457 4.8 10.9 1.0
O A:HOH2007 4.9 17.9 1.0
CA A:ASN452 4.9 9.9 1.0
O A:GLY7 5.0 13.3 1.0

Cobalt binding site 3 out of 8 in 1gql

Go back to Cobalt Binding Sites List in 1gql
Cobalt binding site 3 out of 8 in the Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1716

b:20.8
occ:0.50
 NH1 A:ARG673 3.3 22.3 1.0
ND2 A:ASN607 3.4 19.5 1.0
CD1 A:TRP609 3.7 16.4 1.0
CD A:ARG673 3.8 22.6 1.0
OD1 A:ASN607 4.1 15.6 1.0
CG A:ASN607 4.2 16.2 1.0
CZ A:ARG673 4.3 20.2 1.0
NE2 A:GLN610 4.3 21.9 1.0
CG A:ARG673 4.3 23.2 1.0
CB A:ARG673 4.3 23.1 1.0
NE A:ARG673 4.5 21.8 1.0
CG A:TRP609 4.5 14.2 1.0
CB A:TRP609 4.6 15.8 1.0
CG A:GLN610 4.6 17.5 1.0
NE1 A:TRP609 4.6 16.0 1.0
CD A:GLN610 4.6 19.3 1.0
CD A:PRO674 4.8 26.2 1.0

Cobalt binding site 4 out of 8 in 1gql

Go back to Cobalt Binding Sites List in 1gql
Cobalt binding site 4 out of 8 in the Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1717

b:16.6
occ:0.50
 O A:HOH2705 3.1 24.9 1.0
O A:HOH2696 3.2 24.1 1.0
ND2 A:ASN162 3.3 12.3 1.0
ND2 A:ASN164 3.4 16.0 1.0
CD1 A:TRP702 3.7 15.9 1.0
CB A:VAL166 3.8 11.2 1.0
CG1 A:VAL166 4.0 13.7 1.0
OD1 A:ASN164 4.0 12.5 1.0
CG A:ASN164 4.1 13.4 1.0
NE1 A:TRP702 4.2 15.3 1.0
CG A:ASN162 4.3 11.4 1.0
CG2 A:VAL166 4.4 11.2 1.0
CB A:ASN162 4.5 8.9 1.0
O A:HOH2213 4.7 18.5 1.0
O B:HOH2703 4.9 22.1 1.0
CG A:TRP702 4.9 14.1 1.0
O A:HOH2695 5.0 23.3 1.0

Cobalt binding site 5 out of 8 in 1gql

Go back to Cobalt Binding Sites List in 1gql
Cobalt binding site 5 out of 8 in the Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 5 of Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co1714

b:17.0
occ:0.50
 OG1 B:THR629 3.0 14.2 1.0
O B:HOH2621 3.1 15.1 1.0
O B:HOH2714 3.3 18.9 1.0
O B:HOH2509 3.5 17.2 1.0
O B:ALA625 3.7 13.1 1.0
CB B:THR629 3.7 13.1 1.0
CA B:MET626 3.8 11.9 1.0
CB B:MET502 3.8 12.8 1.0
CA B:MET502 3.8 12.2 1.0
N B:MET626 3.8 12.1 1.0
C B:ALA625 3.9 12.5 1.0
CG B:MET502 3.9 13.4 1.0
CG B:MET626 4.0 13.2 1.0
CG2 B:THR629 4.2 13.8 1.0
O B:HOH2625 4.3 16.3 1.0
N B:MET502 4.4 12.7 1.0
CB B:MET626 4.5 12.9 1.0
CB B:ALA625 4.5 12.5 1.0
CG1 B:VAL505 4.6 18.0 1.0
O B:HOH2631 4.8 26.3 1.0
CA B:ALA625 4.8 12.1 1.0
C B:MET626 4.9 12.2 1.0
O B:HOH2229 4.9 35.9 1.0
O B:HOH2261 5.0 20.2 1.0

Cobalt binding site 6 out of 8 in 1gql

Go back to Cobalt Binding Sites List in 1gql
Cobalt binding site 6 out of 8 in the Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 6 of Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co1715

b:14.3
occ:0.50
 O B:HOH2654 3.0 15.7 1.0
O B:HOH2481 3.1 11.8 1.0
ND2 B:ASN452 3.3 10.7 1.0
CB B:ASN452 3.5 10.2 1.0
CA B:GLY7 3.6 12.5 1.0
CB B:PRO457 3.6 11.8 1.0
CG B:PRO457 3.6 10.4 1.0
NE2 B:GLN460 3.7 14.5 1.0
CD B:ARG641 3.7 13.3 1.0
CG B:ASN452 3.9 11.0 1.0
CA B:PRO457 4.0 10.9 1.0
N B:GLY7 4.1 12.7 1.0
CG B:ARG641 4.1 11.8 1.0
O B:ASP6 4.3 14.0 1.0
C B:ASP6 4.4 14.9 1.0
CD B:GLN460 4.4 13.0 1.0
OE1 B:GLN644 4.4 19.8 1.0
OE1 B:GLN460 4.5 11.9 1.0
CD B:PRO457 4.7 11.4 1.0
C B:GLY7 4.7 12.6 1.0
N B:PRO457 4.8 10.3 1.0
O B:HOH2006 4.8 16.7 1.0
CA B:ASN452 4.9 9.9 1.0
O B:GLY7 4.9 12.4 1.0

Cobalt binding site 7 out of 8 in 1gql

Go back to Cobalt Binding Sites List in 1gql
Cobalt binding site 7 out of 8 in the Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 7 of Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co1716

b:17.1
occ:0.50
 O B:HOH2715 3.0 32.4 1.0
O B:HOH2717 3.2 27.0 1.0
O B:HOH2706 3.2 22.8 1.0
ND2 B:ASN162 3.3 12.5 1.0
ND2 B:ASN164 3.3 16.1 1.0
O B:HOH2716 3.4 34.5 1.0
CD1 B:TRP702 3.8 15.4 1.0
CB B:VAL166 3.8 11.6 1.0
CG1 B:VAL166 3.9 12.1 1.0
OD1 B:ASN164 4.0 10.4 1.0
CG B:ASN164 4.1 13.6 1.0
NE1 B:TRP702 4.2 13.6 1.0
CG B:ASN162 4.3 10.9 1.0
CG2 B:VAL166 4.3 13.2 1.0
CB B:ASN162 4.6 8.8 1.0
O B:HOH2220 4.7 16.5 1.0
O A:HOH2695 4.9 23.3 1.0
CG B:TRP702 4.9 14.1 1.0
O B:HOH2703 5.0 22.1 1.0
O B:VAL166 5.0 11.9 1.0

Cobalt binding site 8 out of 8 in 1gql

Go back to Cobalt Binding Sites List in 1gql
Cobalt binding site 8 out of 8 in the Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 8 of Structure of Pseudomonas Cellulosa Alpha-D-Glucuronidase Complexed with Glucuronic Acid and Xylotriose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co1717

b:21.8
occ:0.50
 NH1 B:ARG673 3.3 23.0 1.0
O B:HOH2675 3.3 31.9 1.0
ND2 B:ASN607 3.4 17.1 1.0
CD1 B:TRP609 3.7 16.8 1.0
CD B:ARG673 3.7 21.1 1.0
CG B:ARG673 4.2 22.2 1.0
OD1 B:ASN607 4.2 17.1 1.0
CB B:ARG673 4.2 22.9 1.0
CG B:ASN607 4.3 18.1 1.0
CZ B:ARG673 4.3 21.9 1.0
NE2 B:GLN610 4.3 23.2 1.0
NE B:ARG673 4.4 19.9 1.0
CG B:TRP609 4.5 14.0 1.0
CG B:GLN610 4.6 16.4 1.0
CB B:TRP609 4.6 14.1 1.0
NE1 B:TRP609 4.6 17.6 1.0
CD B:GLN610 4.7 19.3 1.0
CD B:PRO674 4.8 26.4 1.0

Reference:

D.Nurizzo, T.Nagy, H.J.Gilbert, G.J.Davies. The Structural Basis For Catalysis and Specificity of the Pseudomonas Cellulosa Alpha-Glucuronidase, GLCA67A Structure V. 10 547 2002.
ISSN: ISSN 0969-2126
PubMed: 11937059
DOI: 10.1016/S0969-2126(02)00742-6
Page generated: Sun Jul 13 17:33:28 2025

Last articles

Mg in 4LQV
Mg in 4LPJ
Mg in 4LPM
Mg in 4LNI
Mg in 4LQ9
Mg in 4LQ3
Mg in 4LPS
Mg in 4LPN
Mg in 4LNF
Mg in 4LPL
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy