Atomistry » Cobalt » PDB 1nyi-1rr2 » 1omk
Atomistry »
  Cobalt »
    PDB 1nyi-1rr2 »
      1omk »

Cobalt in PDB 1omk: The Crystal Structure of D(Cacg(5IU)G)

Protein crystallography data

The structure of The Crystal Structure of D(Cacg(5IU)G), PDB code: 1omk was solved by G.Schuerman, K.Van Hecke, L.Van Meervelt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 18.155, 30.034, 41.988, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 1omk:

The structure of The Crystal Structure of D(Cacg(5IU)G) also contains other interesting chemical elements:

Iodine (I) 2 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the The Crystal Structure of D(Cacg(5IU)G) (pdb code 1omk). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the The Crystal Structure of D(Cacg(5IU)G), PDB code: 1omk:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 1omk

Go back to Cobalt Binding Sites List in 1omk
Cobalt binding site 1 out of 2 in the The Crystal Structure of D(Cacg(5IU)G)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of The Crystal Structure of D(Cacg(5IU)G) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co30

b:17.9
occ:1.00
CO A:NCO30 0.0 17.9 1.0
N6 A:NCO30 2.0 23.2 1.0
N2 A:NCO30 2.0 34.1 1.0
N5 A:NCO30 2.0 15.4 1.0
N3 A:NCO30 2.0 21.1 1.0
N1 A:NCO30 2.0 23.4 1.0
N4 A:NCO30 2.0 40.8 1.0
OP2 B:DG10 3.8 24.9 1.0
O A:HOH134 4.0 33.5 1.0
OP2 A:DG6 4.2 20.2 1.0
O A:HOH109 4.3 24.7 1.0
OP1 A:DG6 4.5 14.5 1.0
O A:HOH132 4.7 43.7 1.0
P A:DG6 4.9 13.6 1.0

Cobalt binding site 2 out of 2 in 1omk

Go back to Cobalt Binding Sites List in 1omk
Cobalt binding site 2 out of 2 in the The Crystal Structure of D(Cacg(5IU)G)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of The Crystal Structure of D(Cacg(5IU)G) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co31

b:15.3
occ:1.00
CO A:NCO31 0.0 15.3 1.0
N5 A:NCO31 2.0 17.7 1.0
N4 A:NCO31 2.0 12.3 1.0
N3 A:NCO31 2.0 16.6 1.0
N2 A:NCO31 2.0 15.4 1.0
N1 A:NCO31 2.0 21.5 1.0
N6 A:NCO31 2.0 18.3 1.0
O6 A:DG6 4.0 12.3 1.0
N7 A:DG6 4.1 13.3 1.0
C6 A:DG6 4.8 10.8 1.0
C5 A:DG6 4.8 10.0 1.0

Reference:

G.Schuerman, K.Van Hecke, L.Van Meervelt. Exploration of the Influence of 5-Iodo-2'-Deoxyuridine Incorporation on the Structure of D[Cacg(Idu)G]. Acta Crystallogr.,Sect.D V. 59 1525 2003.
ISSN: ISSN 0907-4449
PubMed: 12876373
DOI: 10.1107/S0907444903012381
Page generated: Tue Jul 30 14:29:35 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy