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Cobalt in PDB 1r8k: Pdxa Protein; Nad-Dependent Dehydrogenase/Carboxylase; Subunit of Pyridoxine Phosphate Biosynthetic Protein Pdxj- Pdxa [Salmonella Typhimurium]
Enzymatic activity of Pdxa Protein; Nad-Dependent Dehydrogenase/Carboxylase; Subunit of Pyridoxine Phosphate Biosynthetic Protein Pdxj- Pdxa [Salmonella Typhimurium]
All present enzymatic activity of Pdxa Protein; Nad-Dependent Dehydrogenase/Carboxylase; Subunit of Pyridoxine Phosphate Biosynthetic Protein Pdxj- Pdxa [Salmonella Typhimurium]:
1.1.1.262;
1.1.1.262;
Protein crystallography data
The structure of Pdxa Protein; Nad-Dependent Dehydrogenase/Carboxylase; Subunit of Pyridoxine Phosphate Biosynthetic Protein Pdxj- Pdxa [Salmonella Typhimurium], PDB code: 1r8k
was solved by
J.Osipiuk,
P.Quartey,
S.Moy,
F.Collart,
A.Joachimiak,
Midwestcenter For Structural Genomics (Mcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 28.54 / 2.10 |
| Space group | P 41 |
| Cell size a, b, c (Å), α, β, γ (°) | 119.954, 119.954, 55.541, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 20.8 / 23.4 |
Other elements in 1r8k:
The structure of Pdxa Protein; Nad-Dependent Dehydrogenase/Carboxylase; Subunit of Pyridoxine Phosphate Biosynthetic Protein Pdxj- Pdxa [Salmonella Typhimurium] also contains other interesting chemical elements:
| Chlorine | (Cl) | 1 atom |
Cobalt Binding Sites:
The binding sites of Cobalt atom in the Pdxa Protein; Nad-Dependent Dehydrogenase/Carboxylase; Subunit of Pyridoxine Phosphate Biosynthetic Protein Pdxj- Pdxa [Salmonella Typhimurium]
(pdb code 1r8k). This binding sites where shown within
5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Pdxa Protein; Nad-Dependent Dehydrogenase/Carboxylase; Subunit of Pyridoxine Phosphate Biosynthetic Protein Pdxj- Pdxa [Salmonella Typhimurium], PDB code: 1r8k:
Jump to Cobalt binding site number: 1; 2;
In total 2 binding sites of Cobalt where determined in the Pdxa Protein; Nad-Dependent Dehydrogenase/Carboxylase; Subunit of Pyridoxine Phosphate Biosynthetic Protein Pdxj- Pdxa [Salmonella Typhimurium], PDB code: 1r8k:
Jump to Cobalt binding site number: 1; 2;
Cobalt binding site 1 out of 2 in 1r8k
Go back to
Cobalt Binding Sites List in 1r8k
Cobalt binding site 1 out
of 2 in the Pdxa Protein; Nad-Dependent Dehydrogenase/Carboxylase; Subunit of Pyridoxine Phosphate Biosynthetic Protein Pdxj- Pdxa [Salmonella Typhimurium]
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 1 of Pdxa Protein; Nad-Dependent Dehydrogenase/Carboxylase; Subunit of Pyridoxine Phosphate Biosynthetic Protein Pdxj- Pdxa [Salmonella Typhimurium] within 5.0Å range:
|
Cobalt binding site 2 out of 2 in 1r8k
Go back to
Cobalt Binding Sites List in 1r8k
Cobalt binding site 2 out
of 2 in the Pdxa Protein; Nad-Dependent Dehydrogenase/Carboxylase; Subunit of Pyridoxine Phosphate Biosynthetic Protein Pdxj- Pdxa [Salmonella Typhimurium]
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 2 of Pdxa Protein; Nad-Dependent Dehydrogenase/Carboxylase; Subunit of Pyridoxine Phosphate Biosynthetic Protein Pdxj- Pdxa [Salmonella Typhimurium] within 5.0Å range:
|
Reference:
J.Osipiuk,
P.Quartey,
S.Moy,
F.Collart,
A.Joachimiak.
Crystal Structure of Nad-Dependent Dehydrogenase/Carboxylase of Salmonella Typhimurium To Be Published.
Page generated: Sun Jul 13 17:44:54 2025
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