Cobalt in PDB 1sjf: Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U Mutaion, in Cobalt Hexammine Solution

The structure of Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U Mutaion, in Cobalt Hexammine Solution, PDB code: 1sjf was solved by A.Ke, K.Zhou, F.Ding, J.H.D.Cate, J.A.Doudna, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.12 / 2.75
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	108.754, 108.754, 188.381, 90.00, 90.00, 120.00
R / Rfree (%)	24 / 27.5

The binding sites of Cobalt atom in the Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U Mutaion, in Cobalt Hexammine Solution (pdb code 1sjf). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U Mutaion, in Cobalt Hexammine Solution, PDB code: 1sjf:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U Mutaion, in Cobalt Hexammine Solution


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U Mutaion, in Cobalt Hexammine Solution within 5.0Å range: probe atom residue distance (Å) B Occ B:Co201 b:66.4 occ:0.80 CO B:NCO201 0.0 66.4 0.8 N4 B:NCO201 1.9 68.5 0.8 N5 B:NCO201 2.0 67.6 0.8 N2 B:NCO201 2.0 68.0 0.8 N1 B:NCO201 2.0 69.1 0.8 N6 B:NCO201 2.0 68.6 0.8 N3 B:NCO201 2.0 68.0 0.8 O4 B:U163 4.1 77.9 1.0 N1 B:G125 4.2 0.7 1.0 OP1 B:U123 4.2 0.3 1.0 N2 B:G125 4.2 0.9 1.0 O2 B:U120 4.3 71.9 1.0 C2 B:G125 4.7 0.8 1.0 OP1 B:C124 4.9 0.2 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U Mutaion, in Cobalt Hexammine Solution


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U Mutaion, in Cobalt Hexammine Solution within 5.0Å range: probe atom residue distance (Å) B Occ B:Co202 b:47.4 occ:0.60 CO B:NCO202 0.0 47.4 0.6 N5 B:NCO202 1.9 47.8 0.6 N4 B:NCO202 2.0 49.0 0.6 N2 B:NCO202 2.0 50.1 0.6 N1 B:NCO202 2.0 47.4 0.6 N3 B:NCO202 2.0 49.8 0.6 N6 B:NCO202 2.0 50.4 0.6 N7 B:G158 4.4 55.0 1.0 O2' B:C141 4.5 89.3 1.0 O6 B:G159 4.6 54.1 1.0 N7 B:G159 4.7 56.4 1.0 O6 B:G158 4.9 56.0 1.0 NH2 A:ARG52 4.9 41.3 1.0 C2' B:C141 4.9 87.6 1.0

A.Ke, K.Zhou, F.Ding, J.H.Cate, J.A.Doudna. A Conformational Switch Controls Hepatitis Delta Virus Ribozyme Catalysis. Nature V. 429 201 2004.
ISSN: ISSN 0028-0836
PubMed: 15141216
DOI: 10.1038/NATURE02522