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Cobalt in PDB 1v29: Crystal Structure of Nitrile Hydratase From A Thermophile Bacillus Smithii

Enzymatic activity of Crystal Structure of Nitrile Hydratase From A Thermophile Bacillus Smithii

All present enzymatic activity of Crystal Structure of Nitrile Hydratase From A Thermophile Bacillus Smithii:
4.2.1.84;

Protein crystallography data

The structure of Crystal Structure of Nitrile Hydratase From A Thermophile Bacillus Smithii, PDB code: 1v29 was solved by S.Hourai, M.Miki, Y.Takashima, S.Mitsuda, K.Yanagi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.60
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 158.420, 158.420, 126.770, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Nitrile Hydratase From A Thermophile Bacillus Smithii (pdb code 1v29). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Nitrile Hydratase From A Thermophile Bacillus Smithii, PDB code: 1v29:

Cobalt binding site 1 out of 1 in 1v29

Go back to Cobalt Binding Sites List in 1v29
Cobalt binding site 1 out of 1 in the Crystal Structure of Nitrile Hydratase From A Thermophile Bacillus Smithii


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Nitrile Hydratase From A Thermophile Bacillus Smithii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co500

b:27.9
occ:1.00
N A:CYS125 2.0 20.1 1.0
N A:SER124 2.1 21.3 1.0
SG A:CYS123 2.2 15.4 1.0
SG A:CYS120 2.3 19.9 1.0
SG A:CYS125 2.4 12.4 1.0
C A:SER124 2.8 21.3 1.0
CA A:SER124 2.9 21.2 1.0
CA A:CYS125 2.9 18.9 1.0
CB A:CYS123 3.0 20.0 1.0
CB A:CYS125 3.1 17.6 1.0
C A:CYS123 3.1 21.4 1.0
CA A:CYS123 3.4 20.8 1.0
CB A:CYS120 3.6 15.1 1.0
N A:CYS123 3.9 20.8 1.0
O A:SER124 3.9 20.8 1.0
OG A:SER124 4.0 22.2 1.0
CB A:SER124 4.1 21.4 1.0
O A:CYS123 4.3 22.9 1.0
C A:CYS125 4.3 20.4 1.0
O A:CYS125 4.7 19.8 1.0
NH2 B:ARG160 4.8 26.3 1.0
O A:CYS120 4.9 18.0 1.0
CA A:CYS120 5.0 17.1 1.0
O B:HOH295 5.0 40.3 1.0

Reference:

S.Hourai, M.Miki, Y.Takashima, S.Mitsuda, K.Yanagi. Crystal Structure of Nitrile Hydratase From A Thermophilic Bacillus Smithii Biochem.Biophys.Res.Commun. V. 312 340 2003.
ISSN: ISSN 0006-291X
PubMed: 14637142
DOI: 10.1016/J.BBRC.2003.10.124
Page generated: Tue Jul 30 14:42:20 2024

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