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Cobalt in PDB 1y80: Structure of A Corrinoid (Factor Iiim)-Binding Protein From Moorella Thermoacetica

Protein crystallography data

The structure of Structure of A Corrinoid (Factor Iiim)-Binding Protein From Moorella Thermoacetica, PDB code: 1y80 was solved by Z.-J.Liu, Z.-Q.Fu, W.Tempel, A.Das, J.Habel, W.Zhou, J.Chang, L.Chen, D.Lee, D.Nguyen, S.-H.Chang, L.Ljungdahl, J.P.Rose, B.-C.Wang, Southeastcollaboratory For Structural Genomics (Secsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.63 / 1.70
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 55.689, 62.738, 34.543, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 21

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Structure of A Corrinoid (Factor Iiim)-Binding Protein From Moorella Thermoacetica (pdb code 1y80). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Structure of A Corrinoid (Factor Iiim)-Binding Protein From Moorella Thermoacetica, PDB code: 1y80:

Cobalt binding site 1 out of 1 in 1y80

Go back to Cobalt Binding Sites List in 1y80
Cobalt binding site 1 out of 1 in the Structure of A Corrinoid (Factor Iiim)-Binding Protein From Moorella Thermoacetica


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of A Corrinoid (Factor Iiim)-Binding Protein From Moorella Thermoacetica within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co301

b:14.7
occ:1.00
CO A:B1M301 0.0 14.7 1.0
N21 A:B1M301 1.8 12.2 1.0
N23 A:B1M301 1.9 11.8 1.0
N24 A:B1M301 1.9 12.9 1.0
N22 A:B1M301 1.9 12.5 1.0
NE2 A:HIS101 2.4 13.4 1.0
O A:HOH458 2.7 42.3 1.0
C19 A:B1M301 2.7 14.6 1.0
C1 A:B1M301 2.8 14.3 1.0
C9 A:B1M301 2.8 13.2 1.0
C4 A:B1M301 2.8 12.3 1.0
C14 A:B1M301 2.9 12.8 1.0
C11 A:B1M301 2.9 13.1 1.0
C6 A:B1M301 2.9 12.8 1.0
C16 A:B1M301 2.9 12.4 1.0
C10 A:B1M301 3.2 14.0 1.0
C5 A:B1M301 3.3 11.1 1.0
C15 A:B1M301 3.3 10.9 1.0
CE1 A:HIS101 3.4 12.3 1.0
CD2 A:HIS101 3.4 13.9 1.0
C20 A:B1M301 3.5 13.8 1.0
C2 A:B1M301 4.1 14.7 1.0
C3 A:B1M301 4.1 11.8 1.0
C18 A:B1M301 4.2 15.5 1.0
C8 A:B1M301 4.2 13.6 1.0
C13 A:B1M301 4.2 12.9 1.0
C12 A:B1M301 4.2 14.6 1.0
C17 A:B1M301 4.2 12.9 1.0
C7 A:B1M301 4.2 14.1 1.0
C26 A:B1M301 4.5 17.4 1.0
ND1 A:HIS101 4.5 12.6 1.0
CG A:HIS101 4.5 11.9 1.0
C37 A:B1M301 4.8 12.5 1.0
C35 A:B1M301 4.8 11.2 1.0
C53 A:B1M301 4.9 11.4 1.0
C41 A:B1M301 4.9 13.2 1.0
C54 A:B1M301 4.9 13.5 1.0
C47 A:B1M301 5.0 15.4 1.0
C48 A:B1M301 5.0 14.5 1.0

Reference:

Z.-J.Liu, Z.-Q.Fu, W.Tempel, A.Das, J.Habel, W.Zhou, J.Chang, L.Chen, D.Lee, D.Nguyen, S.-H.Chang, L.Ljungdahl, J.P.Rose, B.-C.Wang. Structure of A Corrinoid (Factor Iiim)-Binding Protein From Moorella Thermoacetica To Be Published.
Page generated: Sun Jul 13 17:58:36 2025

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