Cobalt in PDB 1ycl: Crystal Structure of B. Subtilis Luxs in Complex with A Catalytic 2- Ketone Intermediate

The structure of Crystal Structure of B. Subtilis Luxs in Complex with A Catalytic 2- Ketone Intermediate, PDB code: 1ycl was solved by R.Rajan, J.Zhu, X.Hu, D.Pei, C.E.Bell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	16.05 / 1.80
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	62.530, 62.530, 149.650, 90.00, 90.00, 120.00
R / Rfree (%)	22.5 / 25.6

The binding sites of Cobalt atom in the Crystal Structure of B. Subtilis Luxs in Complex with A Catalytic 2- Ketone Intermediate (pdb code 1ycl). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of B. Subtilis Luxs in Complex with A Catalytic 2- Ketone Intermediate, PDB code: 1ycl:

Cobalt binding site 1 out of 1 in the Crystal Structure of B. Subtilis Luxs in Complex with A Catalytic 2- Ketone Intermediate


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of B. Subtilis Luxs in Complex with A Catalytic 2- Ketone Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ A:Co501 b:33.8 occ:1.00 NE2 A:HIS54 2.1 24.0 1.0 NE2 A:HIS58 2.1 32.1 1.0 O2 A:KRI401 2.2 45.5 1.0 SG A:CYS126 2.4 29.5 1.0 CE1 A:HIS58 2.8 31.8 1.0 O3 A:KRI401 2.9 47.3 1.0 CE1 A:HIS54 3.0 25.5 1.0 CD2 A:HIS54 3.1 22.6 1.0 C2 A:KRI401 3.1 46.4 1.0 CD2 A:HIS58 3.2 29.6 1.0 C3 A:KRI401 3.3 48.4 1.0 C4 A:KRI401 3.6 49.6 1.0 CB A:CYS126 3.6 30.0 1.0 N A:GLY127 4.0 29.1 1.0 ND1 A:HIS58 4.0 30.6 1.0 NE2 A:HIS132 4.1 29.8 1.0 CA A:CYS126 4.1 30.5 1.0 ND1 A:HIS54 4.1 24.1 1.0 CG A:HIS54 4.2 24.8 1.0 CE1 A:HIS132 4.2 30.0 1.0 CG A:HIS58 4.2 29.2 1.0 O A:HOH200 4.4 32.8 1.0 C1 A:KRI401 4.5 46.0 1.0 C A:CYS126 4.5 30.0 1.0 C5 A:KRI401 4.5 50.2 1.0 OE1 A:GLU57 4.6 27.5 1.0 O4 A:KRI401 4.6 51.1 1.0 N A:GLN128 4.8 27.9 1.0

R.Rajan, J.Zhu, X.Hu, D.Pei, C.E.Bell. Crystal Structure of S-Ribosylhomocysteinase (Luxs) in Complex with A Catalytic 2-Ketone Intermediate. Biochemistry V. 44 3745 2005.
ISSN: ISSN 0006-2960
PubMed: 15751951
DOI: 10.1021/BI0477384