Cobalt in PDB 3ixn: Crystal Structure of D(Ccggtaccgg) As B-Dna Duplex

The structure of Crystal Structure of D(Ccggtaccgg) As B-Dna Duplex, PDB code: 3ixn was solved by S.Venkadesh, P.K.Mandal, N.Gautham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.53 / 2.87
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	32.940, 32.940, 94.854, 90.00, 90.00, 120.00
R / Rfree (%)	26.1 / 27.5

The binding sites of Cobalt atom in the Crystal Structure of D(Ccggtaccgg) As B-Dna Duplex (pdb code 3ixn). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 3 binding sites of Cobalt where determined in the Crystal Structure of D(Ccggtaccgg) As B-Dna Duplex, PDB code: 3ixn:
Jump to Cobalt binding site number: 1; 2; 3;

Cobalt binding site 1 out of 3 in the Crystal Structure of D(Ccggtaccgg) As B-Dna Duplex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of D(Ccggtaccgg) As B-Dna Duplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Co11 b:54.2 occ:1.00 N7 A:DG3 2.9 17.4 1.0 C8 A:DG3 3.1 27.3 1.0 O6 A:DG4 3.6 42.2 1.0 C5 A:DG3 4.1 7.5 1.0 N9 A:DG3 4.2 21.5 1.0 N7 A:DG4 4.5 33.4 1.0 C6 A:DG4 4.6 37.2 1.0 C4 A:DG3 4.7 13.6 1.0 C6 A:DG3 5.0 2.0 1.0 C2' A:DG3 5.0 35.6 1.0

Cobalt binding site 2 out of 3 in the Crystal Structure of D(Ccggtaccgg) As B-Dna Duplex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of D(Ccggtaccgg) As B-Dna Duplex within 5.0Å range: probe atom residue distance (Å) B Occ B:Co11 b:40.8 occ:1.00 O B:HOH13 2.3 2.0 1.0 O B:HOH18 2.3 27.4 1.0 N7 B:DG3 2.9 26.0 1.0 C8 B:DG3 3.3 28.7 1.0 C5 B:DG3 4.0 21.2 1.0 O6 B:DG4 4.1 18.4 1.0 OP2 B:DG3 4.4 52.6 1.0 O6 B:DG3 4.6 20.4 1.0 N9 B:DG3 4.6 24.8 1.0 C2' B:DC2 4.6 39.8 1.0 C6 B:DG3 4.8 21.7 1.0 C6 B:DC2 4.8 30.8 1.0 C5 B:DC2 4.8 36.4 1.0 N7 B:DG4 4.9 7.8 1.0 C4 B:DG3 5.0 22.4 1.0

Cobalt binding site 3 out of 3 in the Crystal Structure of D(Ccggtaccgg) As B-Dna Duplex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Crystal Structure of D(Ccggtaccgg) As B-Dna Duplex within 5.0Å range: probe atom residue distance (Å) B Occ B:Co12 b:46.6 occ:1.00 N7 B:DG9 2.4 9.0 1.0 O B:HOH16 2.5 19.2 1.0 C8 B:DG9 3.4 18.3 1.0 O6 B:DG9 3.4 23.9 1.0 C5 B:DG9 3.4 16.2 1.0 C6 B:DG9 3.9 16.2 1.0 C5 B:DC8 4.4 44.4 1.0 C6 B:DC8 4.4 50.0 1.0 C4 B:DG9 4.6 20.1 1.0 N9 B:DG9 4.6 26.0 1.0 C2' B:DC8 5.0 59.5 1.0

S.Venkadesh, P.K.Mandal, N.Gautham. Crystal Structure of Inverted Repeat Sequence D(Ccggtaccgg)As B-Dna Duplex To Be Published.