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Cobalt in PDB 3krg: Structural Insights Into Substrate Specificity and the Anti Beta- Elimination Mechanism of Pectate Lyase

Enzymatic activity of Structural Insights Into Substrate Specificity and the Anti Beta- Elimination Mechanism of Pectate Lyase

All present enzymatic activity of Structural Insights Into Substrate Specificity and the Anti Beta- Elimination Mechanism of Pectate Lyase:
4.2.2.2;

Protein crystallography data

The structure of Structural Insights Into Substrate Specificity and the Anti Beta- Elimination Mechanism of Pectate Lyase, PDB code: 3krg was solved by R.W.Pickersgill, T.T.To, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.18 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 50.626, 69.066, 59.656, 90.00, 113.85, 90.00
R / Rfree (%) 13.2 / 19.6

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Structural Insights Into Substrate Specificity and the Anti Beta- Elimination Mechanism of Pectate Lyase (pdb code 3krg). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Structural Insights Into Substrate Specificity and the Anti Beta- Elimination Mechanism of Pectate Lyase, PDB code: 3krg:

Cobalt binding site 1 out of 1 in 3krg

Go back to Cobalt Binding Sites List in 3krg
Cobalt binding site 1 out of 1 in the Structural Insights Into Substrate Specificity and the Anti Beta- Elimination Mechanism of Pectate Lyase


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structural Insights Into Substrate Specificity and the Anti Beta- Elimination Mechanism of Pectate Lyase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co400

b:20.5
occ:1.00
 O A:HOH729 2.2 25.3 1.0
OD2 A:ASP227 2.3 10.2 1.0
OD1 A:ASP184 2.3 5.3 1.0
OD2 A:ASP184 2.3 6.5 1.0
O A:HOH434 2.3 8.5 1.0
OD2 A:ASP223 2.3 14.1 1.0
CG A:ASP184 2.6 4.4 1.0
CG A:ASP227 3.4 4.6 1.0
CG A:ASP223 3.6 6.2 1.0
CB A:ASP227 3.8 2.2 1.0
O6A A:ADA403 3.9 37.0 1.0
CB A:ASP184 4.1 2.3 1.0
N A:GLY224 4.2 2.0 1.0
O A:HOH526 4.2 36.2 1.0
OD1 A:ASP227 4.4 5.1 1.0
CB A:ASP223 4.4 2.0 1.0
O A:HOH1022 4.5 14.8 1.0
OD1 A:ASP223 4.5 8.3 1.0
CA A:GLY224 4.5 2.0 1.0
OG1 A:THR187 4.8 4.7 1.0
C6 A:ADA403 4.9 37.1 1.0
CA A:ASP184 4.9 2.3 1.0
N A:ASP184 5.0 2.4 1.0
O6B A:ADA403 5.0 33.2 1.0

Reference:

A.Seyedarabi, T.T.To, S.Ali, S.Hussain, M.Fries, R.Madsen, M.H.Clausen, S.Teixteira, K.Brocklehurst, R.W.Pickersgill. Structural Insights Into Substrate Specificity and the Anti Beta-Elimination Mechanism of Pectate Lyase Biochemistry V. 49 539 2010.
ISSN: ISSN 0006-2960
PubMed: 20000851
DOI: 10.1021/BI901503G
Page generated: Sun Jul 13 19:06:22 2025

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