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Cobalt in PDB 3w1n: Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Iodoorotate

Enzymatic activity of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Iodoorotate

All present enzymatic activity of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Iodoorotate:
1.3.98.1;

Protein crystallography data

The structure of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Iodoorotate, PDB code: 3w1n was solved by D.K.Inaoka, M.Iida, T.Tabuchi, N.Lee, S.Matsuoka, T.Shiba, K.Sakamoto, S.Suzuki, E.O.Balogun, T.Nara, T.Aoki, M.Inoue, T.Honma, A.Tanaka, S.Harada, K.Kita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.32 / 2.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.580, 71.889, 124.208, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 23.6

Other elements in 3w1n:

The structure of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Iodoorotate also contains other interesting chemical elements:

Iodine (I) 2 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Iodoorotate (pdb code 3w1n). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Iodoorotate, PDB code: 3w1n:

Cobalt binding site 1 out of 1 in 3w1n

Go back to Cobalt Binding Sites List in 3w1n
Cobalt binding site 1 out of 1 in the Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Iodoorotate


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Iodoorotate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co402

b:9.3
occ:1.00
CO A:NCO402 0.0 9.3 1.0
N3 A:NCO402 2.0 9.2 1.0
N6 A:NCO402 2.0 9.1 1.0
N5 A:NCO402 2.0 8.6 1.0
N4 A:NCO402 2.0 9.1 1.0
N2 A:NCO402 2.0 9.1 1.0
N1 A:NCO402 2.0 9.3 1.0
O A:HOH702 3.8 9.8 1.0
O A:GLN275 3.9 8.3 1.0
O A:GLU276 4.1 7.8 1.0
O A:HOH560 4.4 17.4 1.0
O A:HOH651 4.4 14.4 1.0
O A:HOH710 4.6 24.7 1.0
C A:GLU276 4.8 8.5 1.0

Reference:

D.K.Inaoka, M.Iida, T.Tabuchi, N.Lee, S.Matsuoka, T.Shiba, K.Sakamoto, S.Suzuki, E.O.Balogun, T.Nara, T.Aoki, M.Inoue, T.Honma, A.Tanaka, S.Harada, K.Kita. Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Iodoorotate To Be Published.
Page generated: Sun Jul 13 19:32:25 2025

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