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Cobalt in PDB 3w1p: Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Ethenyl-2,6-Dioxo-1,2,3,6-Tetrahydropyrimidine-4- Carboxylic Acid

Enzymatic activity of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Ethenyl-2,6-Dioxo-1,2,3,6-Tetrahydropyrimidine-4- Carboxylic Acid

All present enzymatic activity of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Ethenyl-2,6-Dioxo-1,2,3,6-Tetrahydropyrimidine-4- Carboxylic Acid:
1.3.98.1;

Protein crystallography data

The structure of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Ethenyl-2,6-Dioxo-1,2,3,6-Tetrahydropyrimidine-4- Carboxylic Acid, PDB code: 3w1p was solved by D.K.Inaoka, M.Iida, T.Tabuchi, N.Lee, S.Matsuoka, T.Shiba, K.Sakamoto, S.Suzuki, E.O.Balogun, T.Nara, T.Aoki, M.Inoue, T.Honma, A.Tanaka, S.Harada, K.Kita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.84 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.321, 71.907, 124.026, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 22.7

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Ethenyl-2,6-Dioxo-1,2,3,6-Tetrahydropyrimidine-4- Carboxylic Acid (pdb code 3w1p). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Ethenyl-2,6-Dioxo-1,2,3,6-Tetrahydropyrimidine-4- Carboxylic Acid, PDB code: 3w1p:

Cobalt binding site 1 out of 1 in 3w1p

Go back to Cobalt Binding Sites List in 3w1p
Cobalt binding site 1 out of 1 in the Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Ethenyl-2,6-Dioxo-1,2,3,6-Tetrahydropyrimidine-4- Carboxylic Acid


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Ethenyl-2,6-Dioxo-1,2,3,6-Tetrahydropyrimidine-4- Carboxylic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co402

b:9.8
occ:1.00
CO A:NCO402 0.0 9.8 1.0
N6 A:NCO402 2.0 10.0 1.0
N5 A:NCO402 2.0 9.3 1.0
N2 A:NCO402 2.0 9.2 1.0
N3 A:NCO402 2.0 10.1 1.0
N4 A:NCO402 2.0 9.2 1.0
N1 A:NCO402 2.0 9.7 1.0
O A:GLN275 3.8 7.8 1.0
O A:HOH753 3.8 26.5 1.0
O A:GLU276 4.2 8.4 1.0
O A:HOH670 4.4 20.9 1.0
O A:HOH781 4.4 33.5 1.0
O A:HOH560 4.4 17.3 1.0
O A:HOH766 4.5 22.7 1.0
O A:HOH788 4.7 35.8 1.0
C A:GLU276 4.8 8.5 1.0
C A:GLN275 5.0 8.2 1.0

Reference:

D.K.Inaoka, M.Iida, T.Tabuchi, N.Lee, S.Matsuoka, T.Shiba, K.Sakamoto, S.Suzuki, E.O.Balogun, T.Nara, T.Aoki, M.Inoue, T.Honma, A.Tanaka, S.Harada, K.Kita. Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with 5-Ethenyl-2,6-Dioxo-1,2,3,6-Tetrahydropyrimidine-4- Carboxylic Acid To Be Published.
Page generated: Sun Jul 13 19:32:32 2025

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