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Cobalt in PDB 3w1r: Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-045A

Enzymatic activity of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-045A

All present enzymatic activity of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-045A:
1.3.98.1;

Protein crystallography data

The structure of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-045A, PDB code: 3w1r was solved by D.K.Inaoka, M.Iida, T.Tabuchi, N.Lee, S.Matsuoka, T.Shiba, K.Sakamoto, S.Suzuki, E.O.Balogun, T.Nara, T.Aoki, M.Inoue, T.Honma, A.Tanaka, S.Harada, K.Kita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.10 / 1.58
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.951, 71.810, 129.116, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 18.1

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-045A (pdb code 3w1r). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-045A, PDB code: 3w1r:

Cobalt binding site 1 out of 1 in 3w1r

Go back to Cobalt Binding Sites List in 3w1r
Cobalt binding site 1 out of 1 in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-045A


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-045A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co402

b:8.8
occ:1.00
CO A:NCO402 0.0 8.8 1.0
N5 A:NCO402 2.0 10.5 1.0
N2 A:NCO402 2.0 10.3 1.0
N4 A:NCO402 2.0 9.2 1.0
N3 A:NCO402 2.1 10.3 1.0
N1 A:NCO402 2.1 8.8 1.0
N6 A:NCO402 2.1 8.8 1.0
O A:GLN275 3.9 6.4 1.0
O A:HOH757 4.0 17.3 1.0
O A:GLU276 4.1 7.4 1.0
O A:HOH662 4.3 25.8 1.0
O A:HOH796 4.3 25.2 1.0
O A:HOH787 4.3 21.7 1.0
O A:HOH555 4.4 14.7 1.0
O A:HOH768 4.4 20.9 1.0
C A:GLU276 4.8 5.8 1.0

Reference:

D.K.Inaoka, M.Iida, T.Tabuchi, N.Lee, S.Matsuoka, T.Shiba, K.Sakamoto, S.Suzuki, E.O.Balogun, T.Nara, T.Aoki, M.Inoue, T.Honma, A.Tanaka, S.Harada, K.Kita. Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-045A To Be Published.
Page generated: Sun Jul 13 19:32:42 2025

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