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Cobalt in PDB 3w2k: Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-165

Enzymatic activity of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-165

All present enzymatic activity of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-165:
1.3.98.1;

Protein crystallography data

The structure of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-165, PDB code: 3w2k was solved by D.K.Inaoka, M.Iida, T.Tabuchi, N.Lee, S.Matsuoka, T.Shiba, K.Sakamoto, S.Suzuki, E.O.Balogun, T.Nara, T.Aoki, M.Inoue, T.Honma, A.Tanaka, S.Harada, K.Kita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.66 / 1.54
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.057, 71.981, 128.884, 90.00, 90.00, 90.00
R / Rfree (%) 13.6 / 16.9

Other elements in 3w2k:

The structure of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-165 also contains other interesting chemical elements:

Fluorine (F) 2 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-165 (pdb code 3w2k). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-165, PDB code: 3w2k:

Cobalt binding site 1 out of 1 in 3w2k

Go back to Cobalt Binding Sites List in 3w2k
Cobalt binding site 1 out of 1 in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-165


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-165 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co414

b:11.2
occ:1.00
 CO A:NCO414 0.0 11.2 1.0
N5 A:NCO414 2.1 13.4 1.0
N2 A:NCO414 2.1 11.3 1.0
N1 A:NCO414 2.1 11.3 1.0
N4 A:NCO414 2.1 10.4 1.0
N6 A:NCO414 2.1 11.4 1.0
N3 A:NCO414 2.1 12.2 1.0
O A:GLN275 3.8 8.1 1.0
O A:HOH761 4.1 29.9 1.0
O A:GLU276 4.1 10.2 1.0
O A:HOH837 4.2 36.6 1.0
O A:HOH664 4.4 25.9 1.0
O A:HOH557 4.4 17.7 1.0
O A:HOH787 4.4 32.8 1.0
O A:HOH769 4.5 27.2 1.0
O A:HOH796 4.5 31.8 1.0
C A:GLU276 4.9 7.6 1.0

Reference:

D.K.Inaoka, M.Iida, T.Tabuchi, N.Lee, S.Matsuoka, T.Shiba, K.Sakamoto, S.Suzuki, E.O.Balogun, T.Nara, T.Aoki, M.Inoue, T.Honma, A.Tanaka, S.Harada, K.Kita. Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-165 To Be Published.
Page generated: Sun Jul 13 19:33:17 2025

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