Atomistry » Cobalt » PDB 4fe5-4j0b » 4if7
Atomistry »
  Cobalt »
    PDB 4fe5-4j0b »
      4if7 »

Cobalt in PDB 4if7: Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C in Complex with Homocysteine-Methyl Disulfide

Enzymatic activity of Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C in Complex with Homocysteine-Methyl Disulfide

All present enzymatic activity of Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C in Complex with Homocysteine-Methyl Disulfide:
3.4.11.18;

Protein crystallography data

The structure of Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C in Complex with Homocysteine-Methyl Disulfide, PDB code: 4if7 was solved by R.Reddi, R.Gumpena, C.Kishor, A.Addlagatta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.41 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 49.380, 48.216, 56.400, 90.00, 95.25, 90.00
R / Rfree (%) 20.1 / 26.6

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C in Complex with Homocysteine-Methyl Disulfide (pdb code 4if7). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C in Complex with Homocysteine-Methyl Disulfide, PDB code: 4if7:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 4if7

Go back to Cobalt Binding Sites List in 4if7
Cobalt binding site 1 out of 2 in the Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C in Complex with Homocysteine-Methyl Disulfide


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C in Complex with Homocysteine-Methyl Disulfide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co401

b:20.4
occ:1.00
OXT A:HCM403 1.9 18.2 0.7
OE1 A:GLU269 2.0 17.0 1.0
OE2 A:GLU238 2.1 18.4 1.0
NE2 A:HIS205 2.1 18.6 1.0
OD1 A:ASP142 2.2 19.2 1.0
C A:HCM403 2.7 19.8 0.7
CD A:GLU269 3.0 15.4 1.0
CD2 A:HIS205 3.1 18.9 1.0
O A:HCM403 3.1 18.8 0.7
CD A:GLU238 3.1 18.1 1.0
CE1 A:HIS205 3.2 18.2 1.0
CG A:ASP142 3.2 18.1 1.0
CO A:CO402 3.3 22.1 1.0
OE2 A:GLU269 3.4 15.2 1.0
OE1 A:GLU238 3.4 21.5 1.0
OG1 A:THR236 3.6 13.6 1.0
OD2 A:ASP142 3.7 16.4 1.0
CG2 A:THR236 3.8 16.9 1.0
CB A:THR236 4.0 16.4 1.0
CA A:HCM403 4.0 21.9 0.7
CG A:HIS205 4.2 18.8 1.0
ND1 A:HIS205 4.2 17.9 1.0
CB A:ASP142 4.3 17.6 1.0
CG A:GLU269 4.3 16.8 1.0
CG A:GLU238 4.4 18.5 1.0
O A:HOH564 4.4 29.3 1.0
N A:HCM403 4.4 20.4 0.7
O A:HOH504 4.6 27.5 1.0
CB A:GLU238 4.8 19.1 1.0
NE2 A:HIS212 4.8 22.9 1.0

Cobalt binding site 2 out of 2 in 4if7

Go back to Cobalt Binding Sites List in 4if7
Cobalt binding site 2 out of 2 in the Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C in Complex with Homocysteine-Methyl Disulfide


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C in Complex with Homocysteine-Methyl Disulfide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co402

b:22.1
occ:1.00
OE2 A:GLU269 2.1 15.2 1.0
OD2 A:ASP142 2.1 16.4 1.0
OXT A:HCM403 2.1 18.2 0.7
OD1 A:ASP131 2.2 23.0 1.0
N A:HCM403 2.3 20.4 0.7
OD2 A:ASP131 2.4 19.7 1.0
CA A:HCM403 2.5 21.9 0.7
CG A:ASP131 2.6 20.6 1.0
C A:HCM403 2.7 19.8 0.7
CG A:ASP142 2.9 18.1 1.0
CD A:GLU269 3.0 15.4 1.0
OD1 A:ASP142 3.1 19.2 1.0
CO A:CO401 3.3 20.4 1.0
OE1 A:GLU269 3.3 17.0 1.0
O A:HCM403 3.9 18.8 0.7
CB A:HCM403 4.0 24.3 0.7
OG1 A:THR133 4.0 24.0 1.0
CB A:ASP131 4.1 20.7 1.0
ND2 A:ASN144 4.2 19.7 1.0
CB A:ASP142 4.4 17.6 1.0
CG A:GLU269 4.4 16.8 1.0
N A:THR143 4.5 24.4 1.0
OE1 A:GLU238 4.6 21.5 1.0
O A:HOH519 4.7 19.0 1.0
OE2 A:GLU238 4.7 18.4 1.0
O A:THR143 4.7 25.5 1.0
O A:HOH504 4.7 27.5 1.0
C A:ASP142 4.8 22.4 1.0
CB A:ASN144 4.8 20.7 1.0
O A:VAL132 4.8 18.2 1.0
C A:THR143 4.8 23.2 1.0
CA A:ASP142 4.8 18.8 1.0
CA A:ASP131 4.9 21.1 1.0
N A:VAL132 4.9 22.5 1.0
CB A:GLU269 5.0 16.8 1.0
CG A:HCM403 5.0 26.3 0.7
CD A:GLU238 5.0 18.1 1.0

Reference:

R.Reddi, R.Gumpena, C.Kishor, A.Addlagatta. Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C in Complex with Homocysteine-Methyl Disulfide To Be Published.
Page generated: Sun Jul 13 19:48:44 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy