Cobalt in PDB 4jky: Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase

All present enzymatic activity of Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase:
2.7.4.3;

The structure of Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase, PDB code: 4jky was solved by Y.-J.Cho, D.Kern, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	53.46 / 2.37
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	67.550, 73.530, 87.470, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 26.7

The binding sites of Cobalt atom in the Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase (pdb code 4jky). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase, PDB code: 4jky:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase within 5.0Å range: probe atom residue distance (Å) B Occ A:Co303 b:32.9 occ:0.23 O A:HOH401 1.8 33.9 0.8 O A:HOH409 2.0 26.1 1.0 O A:HOH482 2.4 38.3 1.0 O A:HOH437 2.4 28.7 1.0 O3B A:ADP301 3.3 25.3 1.0 O1B A:ADP302 3.6 41.0 1.0 O A:HOH436 3.7 34.2 1.0 O A:HOH413 3.8 32.7 1.0 O2A A:ADP302 3.9 31.3 1.0 CA A:GLY14 4.2 24.9 1.0 OD2 A:ASP81 4.3 20.7 1.0 NH2 A:ARG36 4.4 31.6 1.0 O2B A:ADP301 4.4 31.0 1.0 OG A:SER30 4.4 26.8 1.0 PB A:ADP301 4.4 27.1 1.0 O A:HOH422 4.5 28.2 1.0 N A:GLY14 4.5 23.6 1.0 OD1 A:ASP81 4.6 25.4 1.0 O A:HOH476 4.7 36.8 1.0 NH1 A:ARG124 4.7 36.7 1.0 O1A A:ADP302 4.7 37.0 1.0 PA A:ADP302 4.8 29.4 1.0 CG A:ASP81 4.8 23.4 1.0 O1A A:ADP301 4.8 32.4 1.0 OD1 A:ASP33 4.9 37.0 1.0

Cobalt binding site 2 out of 2 in the Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase within 5.0Å range: probe atom residue distance (Å) B Occ B:Co303 b:39.4 occ:0.09 O B:HOH401 1.3 43.3 0.9 O B:HOH437 2.2 42.2 1.0 O B:HOH459 2.4 37.2 1.0 O B:HOH429 2.4 40.5 1.0 O B:HOH458 2.7 40.2 0.8 O3B B:ADP301 2.8 37.3 1.0 O2B B:ADP302 3.4 45.5 1.0 CA B:GLY14 3.9 37.6 1.0 OD2 B:ASP81 4.0 39.1 1.0 PB B:ADP301 4.0 36.6 1.0 N B:GLY14 4.1 34.9 1.0 O1B B:ADP301 4.2 31.8 1.0 O1A B:ADP301 4.3 33.9 1.0 O2A B:ADP302 4.4 36.4 1.0 O B:HOH442 4.4 34.7 1.0 OD1 B:ASP81 4.6 36.4 1.0 O1A B:ADP302 4.6 28.7 1.0 OG B:SER30 4.6 34.9 1.0 CG B:ASP81 4.7 34.9 1.0 NH2 B:ARG36 4.7 30.2 1.0 PB B:ADP302 4.8 56.4 1.0 NH1 B:ARG124 4.8 47.0 1.0 PA B:ADP302 4.9 34.7 1.0 PA B:ADP301 4.9 34.1 1.0 O3A B:ADP301 4.9 45.7 1.0

Y.-J.Cho, D.Kern. A Metal in the Active Site of An Enzyme To Be Published.