Cobalt in PDB 5ch9: Gkap Mutant B12

The structure of Gkap Mutant B12, PDB code: 5ch9 was solved by L.-Q.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	50.822, 79.643, 90.066, 90.00, 99.86, 90.00
R / Rfree (%)	18.3 / 21.3

The binding sites of Cobalt atom in the Gkap Mutant B12 (pdb code 5ch9). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 4 binding sites of Cobalt where determined in the Gkap Mutant B12, PDB code: 5ch9:
Jump to Cobalt binding site number: 1; 2; 3; 4;

Cobalt binding site 1 out of 4 in the Gkap Mutant B12


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Gkap Mutant B12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Co401 b:24.6 occ:1.00 O A:HOH502 1.7 37.4 1.0 OQ1 A:KCX145 1.8 31.4 1.0 OD1 A:ASP270 1.9 23.6 1.0 NE2 A:HIS23 1.9 24.8 1.0 NE2 A:HIS25 1.9 23.9 1.0 CX A:KCX145 2.8 37.5 1.0 CE1 A:HIS25 2.9 23.2 1.0 CE1 A:HIS23 2.9 24.7 1.0 CD2 A:HIS23 3.0 24.3 1.0 CG A:ASP270 3.0 23.1 1.0 CD2 A:HIS25 3.0 20.7 1.0 OQ2 A:KCX145 3.3 48.5 1.0 OD2 A:ASP270 3.4 26.1 1.0 CO A:CO402 3.7 60.1 1.0 NZ A:KCX145 3.9 38.6 1.0 ND1 A:HIS25 4.0 23.1 1.0 ND1 A:HIS23 4.0 23.3 1.0 CG A:HIS23 4.1 23.5 1.0 CG A:HIS25 4.1 22.3 1.0 CB A:ASP270 4.4 21.3 1.0 CE1 A:HIS206 4.4 30.0 1.0 O A:HOH534 4.6 46.2 1.0 NE2 A:HIS206 4.7 33.7 1.0 CG A:PRO69 4.7 23.1 1.0 CA A:ASP270 4.9 21.0 1.0

Cobalt binding site 2 out of 4 in the Gkap Mutant B12


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Gkap Mutant B12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Co402 b:60.1 occ:1.00 OQ2 A:KCX145 1.8 48.5 1.0 CD2 A:HIS178 1.9 49.9 1.0 NE2 A:HIS206 2.0 33.7 1.0 CG A:HIS178 2.5 44.8 1.0 NE2 A:HIS178 2.8 49.0 1.0 CE1 A:HIS206 2.9 30.0 1.0 CX A:KCX145 3.0 37.5 1.0 CD2 A:HIS206 3.1 31.4 1.0 CB A:HIS178 3.1 40.9 1.0 OQ1 A:KCX145 3.4 31.4 1.0 ND1 A:HIS178 3.4 54.1 1.0 CE1 A:HIS178 3.5 50.9 1.0 CO A:CO401 3.7 24.6 1.0 O A:HOH502 3.7 37.4 1.0 NH1 A:ARG230 3.9 54.9 1.0 ND1 A:HIS206 4.0 27.4 1.0 CE1 A:HIS23 4.1 24.7 1.0 CG A:HIS206 4.1 28.8 1.0 NZ A:KCX145 4.2 38.6 1.0 OD2 A:ASP270 4.3 26.1 1.0 NE2 A:HIS23 4.3 24.8 1.0 O A:HOH534 4.3 46.2 1.0 CA A:HIS178 4.4 34.8 1.0 CE A:KCX145 4.7 32.7 1.0 OD1 A:ASP270 4.7 23.6 1.0 NE A:ARG230 4.7 41.5 1.0 CZ A:ARG230 4.8 49.6 1.0 CG A:ASP270 4.8 23.1 1.0

Cobalt binding site 3 out of 4 in the Gkap Mutant B12


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Gkap Mutant B12 within 5.0Å range: probe atom residue distance (Å) B Occ B:Co401 b:63.1 occ:1.00 OQ2 B:KCX145 1.8 56.4 1.0 O B:HOH501 1.8 35.1 1.0 NE2 B:HIS206 2.0 36.7 1.0 CD2 B:HIS178 2.0 47.5 1.0 CE1 B:HIS206 2.8 34.0 1.0 CG B:HIS178 2.9 43.9 1.0 NE2 B:HIS178 3.0 51.4 1.0 CX B:KCX145 3.0 46.6 1.0 CD2 B:HIS206 3.1 34.1 1.0 OQ1 B:KCX145 3.3 34.4 1.0 CB B:HIS178 3.5 40.5 1.0 CO B:CO402 3.5 28.6 1.0 ND1 B:HIS178 4.0 54.5 1.0 CE1 B:HIS23 4.0 28.8 1.0 CE1 B:HIS178 4.0 51.4 1.0 ND1 B:HIS206 4.0 33.0 1.0 OD2 B:ASP270 4.0 37.8 1.0 O B:HOH558 4.1 48.3 1.0 CG B:HIS206 4.2 33.6 1.0 NZ B:KCX145 4.2 44.5 1.0 NE2 B:HIS23 4.2 30.3 1.0 NH1 B:ARG230 4.4 50.8 1.0 OD1 B:ASP270 4.5 33.6 1.0 O B:HOH559 4.6 49.8 1.0 CE B:KCX145 4.6 39.1 1.0 CG B:ASP270 4.6 33.5 1.0 CA B:HIS178 4.8 37.1 1.0

Cobalt binding site 4 out of 4 in the Gkap Mutant B12


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Gkap Mutant B12 within 5.0Å range: probe atom residue distance (Å) B Occ B:Co402 b:28.6 occ:1.00 OQ1 B:KCX145 1.8 34.4 1.0 OD1 B:ASP270 1.8 33.6 1.0 O B:HOH501 1.8 35.1 1.0 NE2 B:HIS25 1.9 27.6 1.0 NE2 B:HIS23 1.9 30.3 1.0 CE1 B:HIS25 2.8 26.4 1.0 CX B:KCX145 2.8 46.6 1.0 CE1 B:HIS23 2.9 28.8 1.0 CG B:ASP270 2.9 33.5 1.0 CD2 B:HIS23 3.0 29.1 1.0 CD2 B:HIS25 3.0 26.6 1.0 OQ2 B:KCX145 3.2 56.4 1.0 OD2 B:ASP270 3.3 37.8 1.0 CO B:CO401 3.5 63.1 1.0 NZ B:KCX145 3.9 44.5 1.0 ND1 B:HIS25 4.0 25.5 1.0 O B:HOH542 4.0 41.3 1.0 ND1 B:HIS23 4.0 27.6 1.0 CG B:HIS23 4.1 27.3 1.0 CG B:HIS25 4.1 26.5 1.0 CB B:ASP270 4.3 31.5 1.0 O B:HOH558 4.4 48.3 1.0 CE1 B:HIS206 4.5 34.0 1.0 NE2 B:HIS206 4.7 36.7 1.0 CG B:PRO69 4.9 27.9 1.0 CA B:ASP270 4.9 30.5 1.0

L.-Q.Chen, L.-Q.Chen. N/A N/A.