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Cobalt in PDB 5hl4: Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography

Protein crystallography data

The structure of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography, PDB code: 5hl4 was solved by C.G.Roessler, R.Agarwal, M.Allaire, R.Alonso-Mori, B.Andi, J.F.R.Bachega, M.Bommer, A.S.Brewster, M.C.Browne, R.Chatterjee, E.Cho, A.E.Cohen, M.Cowan, S.Datwani, V.L.Davidson, J.Defever, B.Eaton, R.Ellson, Y.Feng, L.P.Ghislain, J.M.Glownia, G.Han, J.Hattne, J.Hellmich, A.Heroux, M.Ibrahim, J.Kern, A.Kuczewski, H.T.Lemke, P.Liu, L.Majlof, W.M.Mcclintock, S.Myers, S.Nelsen, J.Olechno, A.M.Orville, N.K.Sauter, A.S.Soares, M.S.Soltis, H.Song, R.G.Stearns, R.Tran, Y.Tsai, M.Uervirojnangkoorn, C.M.Wilmot, V.Yachandra, J.Yano, E.T.Yukl, D.Zhu, A.Zouni, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 90.04 / 2.20
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 98.427, 98.427, 180.087, 90.00, 90.00, 120.00
R / Rfree (%) 26.9 / 33

Other elements in 5hl4:

The structure of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography also contains other interesting chemical elements:

Iron (Fe) 3 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography (pdb code 5hl4). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography, PDB code: 5hl4:

Cobalt binding site 1 out of 1 in 5hl4

Go back to Cobalt Binding Sites List in 5hl4
Cobalt binding site 1 out of 1 in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co503

b:21.4
occ:0.50
CO A:NCO503 0.0 21.4 0.5
N4 A:NCO503 2.0 20.8 0.5
N2 A:NCO503 2.0 21.6 0.5
N1 A:NCO503 2.0 21.6 0.5
N5 A:NCO503 2.0 22.2 0.5
N3 A:NCO503 2.0 22.3 0.5
N6 A:NCO503 2.0 21.7 0.5
O A:ASP13 3.6 21.7 1.0
O A:HOH695 4.0 12.0 1.0
O A:ARG15 4.0 24.8 1.0
C A:ASP13 4.6 21.3 1.0
O A:LEU12 4.7 23.6 1.0

Reference:

C.G.Roessler, R.Agarwal, M.Allaire, R.Alonso-Mori, B.Andi, J.F.Bachega, M.Bommer, A.S.Brewster, M.C.Browne, R.Chatterjee, E.Cho, A.E.Cohen, M.Cowan, S.Datwani, V.L.Davidson, J.Defever, B.Eaton, R.Ellson, Y.Feng, L.P.Ghislain, J.M.Glownia, G.Han, J.Hattne, J.Hellmich, A.Heroux, M.Ibrahim, J.Kern, A.Kuczewski, H.T.Lemke, P.Liu, L.Majlof, W.M.Mcclintock, S.Myers, S.Nelsen, J.Olechno, A.M.Orville, N.K.Sauter, A.S.Soares, S.M.Soltis, H.Song, R.G.Stearns, R.Tran, Y.Tsai, M.Uervirojnangkoorn, C.M.Wilmot, V.Yachandra, J.Yano, E.T.Yukl, D.Zhu, A.Zouni. Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography. Structure V. 24 631 2016.
ISSN: ISSN 0969-2126
PubMed: 26996959
DOI: 10.1016/J.STR.2016.02.007
Page generated: Tue Jul 30 17:55:21 2024

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