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Cobalt in PDB 5yy6: Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Benquitrione

Enzymatic activity of Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Benquitrione

All present enzymatic activity of Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Benquitrione:
1.13.11.27;

Protein crystallography data

The structure of Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Benquitrione, PDB code: 5yy6 was solved by W.C.Yang, J.N.Chen, G.F.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.72 / 2.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 77.333, 83.883, 66.310, 90.00, 100.17, 90.00
R / Rfree (%) 19 / 24.4

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Benquitrione (pdb code 5yy6). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Benquitrione, PDB code: 5yy6:

Cobalt binding site 1 out of 1 in 5yy6

Go back to Cobalt Binding Sites List in 5yy6
Cobalt binding site 1 out of 1 in the Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Benquitrione


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Benquitrione within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co501

b:38.8
occ:1.00
 O11 A:94L502 2.1 41.4 1.0
OE1 A:GLU394 2.2 40.0 1.0
O8 A:94L502 2.3 42.9 1.0
O A:HOH611 2.3 39.1 1.0
NE2 A:HIS226 2.4 34.2 1.0
NE2 A:HIS308 2.4 35.0 1.0
C9 A:94L502 3.1 45.5 1.0
CD2 A:HIS308 3.2 33.9 1.0
C4 A:94L502 3.2 46.5 1.0
CD A:GLU394 3.3 44.4 1.0
CE1 A:HIS226 3.3 32.9 1.0
CD2 A:HIS226 3.4 36.8 1.0
CE1 A:HIS308 3.4 38.1 1.0
OE2 A:GLU394 3.6 43.3 1.0
C5 A:94L502 3.7 44.4 1.0
CG2 A:VAL228 4.3 35.9 1.0
C10 A:94L502 4.4 49.3 1.0
CG A:HIS308 4.4 41.9 1.0
ND1 A:HIS226 4.4 36.6 1.0
ND1 A:HIS308 4.5 40.5 1.0
CG A:HIS226 4.5 32.6 1.0
CB A:ALA310 4.5 36.9 1.0
O A:PHE419 4.5 45.6 1.0
C3 A:94L502 4.6 45.5 1.0
CG A:GLU394 4.6 37.3 1.0
CE2 A:PHE381 4.7 43.6 1.0
CD2 A:PHE419 4.7 36.0 1.0
CB A:GLU394 4.9 38.4 1.0
CB A:PHE419 5.0 38.3 1.0
C6 A:94L502 5.0 49.9 1.0

Reference:

H.Y.Lin, X.Chen, J.N.Chen, D.W.Wang, F.X.Wu, S.Y.Lin, C.G.Zhan, J.W.Wu, W.C.Yang, G.F.Yang. Crystal Structure of 4-Hydroxyphenylpyruvate Dioxygenase in Complex with Substrate Reveals A New Starting Point For Herbicide Discovery. Research (Wash D C) V.2019 02414 2019.
ISSN: ISSN 2639-5274
PubMed: 31549053
DOI: 10.34133/2019/2602414
Page generated: Sun Jul 13 20:47:51 2025

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