Cobalt in PDB 5yy7: Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione

All present enzymatic activity of Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione:
1.13.11.27;

The structure of Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione, PDB code: 5yy7 was solved by W.C.Yang, J.N.Chen, G.F.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.46 / 3.30
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	94.928, 94.928, 185.031, 90.00, 90.00, 90.00
R / Rfree (%)	27.1 / 30.6

The binding sites of Cobalt atom in the Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione (pdb code 5yy7). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione, PDB code: 5yy7:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione within 5.0Å range: probe atom residue distance (Å) B Occ A:Co501 b:33.3 occ:1.00 O8 A:94L502 2.0 51.4 1.0 OE1 A:GLU373 2.2 31.0 1.0 O A:HOH601 2.3 35.1 1.0 NE2 A:HIS287 2.4 30.1 1.0 O11 A:94L502 2.4 40.7 1.0 NE2 A:HIS205 2.4 29.0 1.0 C4 A:94L502 3.0 43.6 1.0 CE1 A:HIS287 3.1 33.6 1.0 C9 A:94L502 3.2 40.9 1.0 CE1 A:HIS205 3.2 29.8 1.0 CD A:GLU373 3.2 33.6 1.0 CD2 A:HIS205 3.5 26.3 1.0 CD2 A:HIS287 3.5 30.6 1.0 C5 A:94L502 3.6 42.9 1.0 OE2 A:GLU373 3.6 28.1 1.0 CG2 A:VAL207 4.0 30.4 1.0 C3 A:94L502 4.3 43.5 1.0 ND1 A:HIS287 4.3 32.9 1.0 ND1 A:HIS205 4.4 28.7 1.0 C10 A:94L502 4.4 39.2 1.0 CE2 A:PHE360 4.4 40.5 1.0 CG A:GLU373 4.5 34.6 1.0 CG A:HIS205 4.6 27.6 1.0 CG A:HIS287 4.6 29.8 1.0 O A:PHE398 4.6 39.2 1.0 CB A:GLU373 4.7 31.2 1.0 CZ A:PHE360 4.7 42.2 1.0 CB A:ALA289 4.9 29.0 1.0 C6 A:94L502 4.9 48.5 1.0 C16 A:94L502 5.0 35.8 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione within 5.0Å range: probe atom residue distance (Å) B Occ B:Co501 b:48.8 occ:1.00 NE2 B:HIS205 2.1 40.1 1.0 O11 B:94L502 2.2 43.6 1.0 OE2 B:GLU373 2.2 37.6 1.0 O8 B:94L502 2.3 38.6 1.0 O B:HOH601 2.3 44.5 1.0 NE2 B:HIS287 2.4 38.0 1.0 CE1 B:HIS287 2.9 37.0 1.0 CE1 B:HIS205 3.0 36.4 1.0 CD2 B:HIS205 3.1 39.1 1.0 C9 B:94L502 3.2 47.0 1.0 C4 B:94L502 3.2 36.9 1.0 CD B:GLU373 3.3 32.5 1.0 C5 B:94L502 3.6 46.3 1.0 CD2 B:HIS287 3.6 36.1 1.0 OE1 B:GLU373 3.8 38.4 1.0 ND1 B:HIS205 4.1 40.8 1.0 ND1 B:HIS287 4.1 34.8 1.0 CG B:HIS205 4.2 40.1 1.0 CG2 B:VAL207 4.3 38.0 1.0 CB B:ALA289 4.5 42.6 1.0 CE2 B:PHE360 4.5 41.6 1.0 C3 B:94L502 4.5 36.1 1.0 CG B:HIS287 4.5 34.1 1.0 C10 B:94L502 4.5 47.6 1.0 CG B:GLU373 4.6 26.1 1.0 O B:PHE398 4.7 55.9 1.0 CB B:GLU373 4.7 30.8 1.0 CZ B:PHE360 4.8 40.7 1.0 C6 B:94L502 4.9 50.8 1.0

W.C.Yang, J.N.Chen, G.F.Yang. Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione (Y13161) To Be Published.