Cobalt in PDB 6dk7: Rets Histidine Kinase Region with Cobalt

The structure of Rets Histidine Kinase Region with Cobalt, PDB code: 6dk7 was solved by J.M.Mancl, F.D.Schubot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.78 / 2.60
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	158.708, 158.708, 243.826, 90.00, 90.00, 90.00
R / Rfree (%)	21.1 / 26.1

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Cobalt atom in the Rets Histidine Kinase Region with Cobalt (pdb code 6dk7). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 24 binding sites of Cobalt where determined in the Rets Histidine Kinase Region with Cobalt, PDB code: 6dk7:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Cobalt binding site 1 out of 24 in the Rets Histidine Kinase Region with Cobalt


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Rets Histidine Kinase Region with Cobalt within 5.0Å range: probe atom residue distance (Å) B Occ A:Co701 b:0.8 occ:1.00 CE1 A:HIS457 2.3 63.6 1.0 NE2 A:HIS457 2.4 66.1 1.0 O A:HOH801 3.2 57.6 1.0 OE2 A:GLU438 3.3 78.3 1.0 ND1 A:HIS457 3.6 49.1 1.0 CD2 A:HIS457 3.8 44.4 1.0 CG A:HIS457 4.3 45.4 1.0 CD A:GLU438 4.4 76.7 1.0 ND2 A:ASN461 4.6 50.4 1.0 CG A:GLU438 4.8 49.9 1.0

Cobalt binding site 2 out of 24 in the Rets Histidine Kinase Region with Cobalt


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Rets Histidine Kinase Region with Cobalt within 5.0Å range: probe atom residue distance (Å) B Occ A:Co702 b:89.0 occ:1.00 NE2 B:HIS604 2.2 89.3 1.0 NE2 A:HIS424 2.4 53.9 1.0 CD2 B:HIS604 3.2 78.6 1.0 CE1 B:HIS604 3.2 79.7 1.0 CD2 A:HIS424 3.3 49.6 1.0 CE1 A:HIS424 3.4 58.5 1.0 CA E:GLY442 4.2 48.7 1.0 ND1 B:HIS604 4.3 63.4 1.0 CG B:HIS604 4.3 66.2 1.0 CG A:HIS424 4.5 37.2 1.0 ND1 A:HIS424 4.5 58.2 1.0 O E:GLY442 5.0 73.7 1.0

Cobalt binding site 3 out of 24 in the Rets Histidine Kinase Region with Cobalt


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Rets Histidine Kinase Region with Cobalt within 5.0Å range: probe atom residue distance (Å) B Occ C:Co701 b:64.1 occ:1.00 O C:HOH805 1.9 53.8 1.0 NE2 G:HIS575 2.1 61.1 1.0 O G:HOH804 2.1 40.4 1.0 NE2 C:HIS575 2.1 64.2 1.0 CE1 C:HIS575 2.9 59.1 1.0 CE1 G:HIS575 3.0 71.8 1.0 CD2 G:HIS575 3.1 66.8 1.0 CD2 C:HIS575 3.2 70.1 1.0 OE1 G:GLU581 3.8 73.4 1.0 O G:PRO576 3.9 51.4 1.0 OE2 G:GLU581 3.9 65.0 1.0 ND1 C:HIS575 4.1 61.1 1.0 ND1 G:HIS575 4.1 64.0 1.0 CG G:HIS575 4.2 60.4 1.0 CD G:GLU581 4.3 71.2 1.0 CG C:HIS575 4.3 67.0 1.0 O C:PRO576 4.3 61.5 1.0 OE1 C:GLU581 4.4 67.4 1.0 OD2 G:ASP578 4.6 88.0 1.0 OD2 C:ASP578 4.9 76.9 1.0 N G:ASP578 4.9 57.7 1.0

Cobalt binding site 4 out of 24 in the Rets Histidine Kinase Region with Cobalt


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Rets Histidine Kinase Region with Cobalt within 5.0Å range: probe atom residue distance (Å) B Occ C:Co702 b:56.5 occ:1.00 NE2 D:HIS591 2.1 72.9 1.0 NE2 C:HIS591 2.1 76.0 1.0 O D:HOH832 2.3 40.1 1.0 O C:HOH808 2.3 57.9 1.0 CD2 C:HIS591 2.9 76.2 1.0 CD2 D:HIS591 3.1 58.3 1.0 CE1 C:HIS591 3.1 71.3 1.0 CE1 D:HIS591 3.1 58.8 1.0 CG C:HIS591 4.0 75.7 1.0 ND1 C:HIS591 4.1 64.6 1.0 ND1 D:HIS591 4.2 49.6 1.0 O C:HOH823 4.2 54.8 1.0 CG D:HIS591 4.2 57.0 1.0 N D:ALA416 4.7 55.6 1.0

Cobalt binding site 5 out of 24 in the Rets Histidine Kinase Region with Cobalt


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 5 of Rets Histidine Kinase Region with Cobalt within 5.0Å range: probe atom residue distance (Å) B Occ C:Co703 b:63.2 occ:1.00 NE2 D:HIS604 1.9 68.3 1.0 NE2 C:HIS424 2.2 60.5 1.0 O C:HOH818 2.4 44.6 1.0 O C:HOH822 2.5 74.4 1.0 CE1 D:HIS604 2.8 66.8 1.0 CD2 D:HIS604 3.0 66.8 1.0 CD2 C:HIS424 3.2 56.9 1.0 CE1 C:HIS424 3.2 66.9 1.0 ND1 D:HIS604 4.0 52.5 1.0 CG D:HIS604 4.1 61.4 1.0 ND1 C:HIS424 4.3 73.2 1.0 CG C:HIS424 4.3 47.7 1.0

Cobalt binding site 6 out of 24 in the Rets Histidine Kinase Region with Cobalt


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 6 of Rets Histidine Kinase Region with Cobalt within 5.0Å range: probe atom residue distance (Å) B Occ C:Co704 b:0.5 occ:1.00 NE2 C:HIS457 2.4 65.5 1.0 CE1 C:HIS457 2.4 46.1 1.0 OE2 C:GLU438 3.3 68.0 1.0 ND1 C:HIS457 3.7 31.3 1.0 CD2 C:HIS457 3.7 46.6 1.0 CG C:HIS457 4.4 36.9 1.0 ND2 C:ASN461 4.5 46.6 1.0 CD C:GLU438 4.6 74.8 1.0 OD1 C:ASN461 4.9 41.7 1.0

Cobalt binding site 7 out of 24 in the Rets Histidine Kinase Region with Cobalt


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 7 of Rets Histidine Kinase Region with Cobalt within 5.0Å range: probe atom residue distance (Å) B Occ D:Co701 b:34.4 occ:1.00 O H:HOH814 2.0 40.6 1.0 O H:HOH816 2.0 57.8 1.0 ND1 D:HIS424 2.2 47.2 1.0 ND1 H:HIS424 2.2 33.3 1.0 O D:HOH808 2.4 36.5 1.0 CE1 H:HIS424 3.0 41.2 1.0 CE1 D:HIS424 3.1 44.7 1.0 CG D:HIS424 3.2 37.1 1.0 CG H:HIS424 3.3 47.8 1.0 CB D:HIS424 3.5 41.8 1.0 CB H:HIS424 3.7 35.5 1.0 O H:HOH823 4.1 41.8 1.0 NE2 H:HIS424 4.1 43.5 1.0 O D:LYS421 4.2 41.2 1.0 O H:LYS421 4.2 36.2 1.0 NE2 D:HIS424 4.2 50.3 1.0 CD2 D:HIS424 4.3 35.7 1.0 OE1 D:GLU425 4.3 48.6 1.0 CD2 H:HIS424 4.3 36.5 1.0 OE1 H:GLU425 4.4 50.5 1.0 OE2 H:GLU425 4.5 52.8 1.0 OE2 D:GLU425 4.6 62.1 1.0 N D:HIS424 4.7 34.0 1.0 CA D:HIS424 4.7 38.6 1.0 N H:HIS424 4.8 39.7 1.0 CB C:ALA598 4.8 87.8 1.0 CD D:GLU425 4.9 62.6 1.0 CA H:HIS424 4.9 36.1 1.0 CD H:GLU425 4.9 53.0 1.0 CB G:ALA598 5.0 71.2 1.0

Cobalt binding site 8 out of 24 in the Rets Histidine Kinase Region with Cobalt


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 8 of Rets Histidine Kinase Region with Cobalt within 5.0Å range: probe atom residue distance (Å) B Occ D:Co702 b:77.0 occ:1.00 OE2 D:GLU438 2.0 54.7 1.0 O D:HOH837 2.4 58.2 1.0 O D:HOH810 2.4 59.8 1.0 NE2 D:HIS457 2.4 61.2 1.0 CD D:GLU438 3.0 60.4 1.0 CE1 D:HIS457 3.1 45.0 1.0 OE1 D:GLU438 3.3 64.0 1.0 CD2 D:HIS457 3.5 46.3 1.0 ND1 D:HIS457 4.3 52.8 1.0 CG D:GLU438 4.3 46.2 1.0 O D:HOH811 4.4 48.6 1.0 CG D:HIS457 4.5 53.8 1.0

Cobalt binding site 9 out of 24 in the Rets Histidine Kinase Region with Cobalt


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 9 of Rets Histidine Kinase Region with Cobalt within 5.0Å range: probe atom residue distance (Å) B Occ D:Co703 b:0.1 occ:1.00 NE2 D:HIS575 2.2 0.1 1.0 CE1 D:HIS575 3.0 0.6 1.0 CD2 D:HIS575 3.3 0.0 1.0 OD1 D:ASP578 3.8 0.2 1.0 ND1 D:HIS575 4.2 92.4 1.0 CB D:ASP578 4.2 81.0 1.0 O D:HOH840 4.3 60.3 1.0 CG D:HIS575 4.3 99.7 1.0 CG D:ASP578 4.4 96.2 1.0 O D:PRO576 4.6 75.1 1.0 CA D:ASP578 4.9 77.1 1.0 O D:HOH841 4.9 63.8 1.0 N D:ASP578 4.9 82.5 1.0

Cobalt binding site 10 out of 24 in the Rets Histidine Kinase Region with Cobalt


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 10 of Rets Histidine Kinase Region with Cobalt within 5.0Å range: probe atom residue distance (Å) B Occ B:Co701 b:56.1 occ:1.00 NE2 B:HIS591 1.3 73.8 1.0 CE1 A:HIS591 2.2 74.3 1.0 CE1 B:HIS591 2.2 65.9 1.0 O B:HOH809 2.3 42.7 1.0 O B:HOH805 2.3 52.2 1.0 CD2 B:HIS591 2.5 55.2 1.0 ND1 A:HIS591 2.9 67.1 1.0 NE2 A:HIS591 3.3 77.3 1.0 ND1 B:HIS591 3.4 43.0 1.0 CG B:HIS591 3.5 52.8 1.0 CG A:HIS591 4.2 73.8 1.0 O A:HOH829 4.3 52.8 1.0 CD2 A:HIS591 4.3 75.7 1.0 N B:ALA416 4.8 52.3 1.0 CB B:HIS591 5.0 56.3 1.0

J.M.Mancl, W.K.Ray, R.F.Helm, F.D.Schubot. Helix Cracking Regulates the Critical Interaction Between Rets and Gacs in Pseudomonas Aeruginosa. Structure V. 27 785 2019.
ISSN: ISSN 0969-2126
PubMed: 30879888
DOI: 10.1016/J.STR.2019.02.006