Cobalt in PDB 7ax7: Crystal Structure of the Xyl-CE4 Domain of A Multidomain Xylanase From the Hindgut Metagenome of Trinervitermes Trinervoides

Enzymatic activity of Crystal Structure of the Xyl-CE4 Domain of A Multidomain Xylanase From the Hindgut Metagenome of Trinervitermes Trinervoides

All present enzymatic activity of Crystal Structure of the Xyl-CE4 Domain of A Multidomain Xylanase From the Hindgut Metagenome of Trinervitermes Trinervoides:
3.2.1.8;

Protein crystallography data

The structure of Crystal Structure of the Xyl-CE4 Domain of A Multidomain Xylanase From the Hindgut Metagenome of Trinervitermes Trinervoides, PDB code: 7ax7 was solved by V.Anye, W.D.Schubert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	19.54 / 2.05
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	40.130, 59.700, 86.100, 90.00, 90.00, 90.00
*R / R_free (%)*	17.3 / 24.3

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of the Xyl-CE4 Domain of A Multidomain Xylanase From the Hindgut Metagenome of Trinervitermes Trinervoides (pdb code 7ax7). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of the Xyl-CE4 Domain of A Multidomain Xylanase From the Hindgut Metagenome of Trinervitermes Trinervoides, PDB code: 7ax7:

Cobalt binding site 1 out of 1 in 7ax7

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Cobalt Binding Sites List in 7ax7

Cobalt binding site 1 out of 1 in the Crystal Structure of the Xyl-CE4 Domain of A Multidomain Xylanase From the Hindgut Metagenome of Trinervitermes Trinervoides

Mono view

Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of the Xyl-CE4 Domain of A Multidomain Xylanase From the Hindgut Metagenome of Trinervitermes Trinervoides within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Co801 b:16.3 occ:1.00	OD1	A:ASP593	2.1	10.0	1.0
	NE2	A:HIS647	2.2	12.2	1.0
	NE2	A:HIS643	2.2	10.3	1.0
	O	A:ACT802	2.3	11.2	1.0
	OXT	A:ACT802	2.3	9.1	1.0
	C	A:ACT802	2.5	13.4	1.0
	CE1	A:HIS647	3.1	16.0	1.0
	CG	A:ASP593	3.1	10.8	1.0
	CD2	A:HIS643	3.1	11.5	1.0
	CD2	A:HIS647	3.2	12.4	1.0
	OD2	A:ASP593	3.3	11.1	1.0
	CE1	A:HIS643	3.3	11.3	1.0
	CB	A:ASP592	4.1	7.5	1.0
	CH3	A:ACT802	4.1	13.1	1.0
	OD2	A:ASP592	4.1	11.4	1.0
	ND1	A:HIS647	4.2	21.4	1.0
	CG	A:HIS643	4.3	8.5	1.0
	CG	A:HIS647	4.3	15.6	1.0
	ND1	A:HIS643	4.4	12.2	1.0
	CG	A:ASP592	4.5	14.9	1.0
	CB	A:ASP593	4.5	8.5	1.0
	CD2	A:HIS734	4.6	9.6	1.0
	CA	A:PRO683	4.7	12.3	1.0
	N	A:TYR684	4.7	12.8	1.0
	NE2	A:HIS734	4.8	10.4	1.0
	N	A:ASP593	4.9	5.6	1.0
	CA	A:ASP593	4.9	4.5	1.0

Reference:

V.Anye, W.D.Schubert. Crystal Structure of the Xyl-CE4 Domain of the Multidomain Xylanase From the Hindgut Metagenome of Trinervitermes Trinervoides To Be Published.

Page generated: Tue Jul 30 19:12:05 2024

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