Cobalt in PDB 7din: Structure of PFGRX1 with Cobalt

All present enzymatic activity of Structure of PFGRX1 with Cobalt:
1.8.4.2;

The structure of Structure of PFGRX1 with Cobalt, PDB code: 7din was solved by Y.Manickam, A.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.97 / 1.80
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	47.932, 47.932, 82.809, 90, 90, 120
R / Rfree (%)	14.7 / 18.4

The binding sites of Cobalt atom in the Structure of PFGRX1 with Cobalt (pdb code 7din). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 3 binding sites of Cobalt where determined in the Structure of PFGRX1 with Cobalt, PDB code: 7din:
Jump to Cobalt binding site number: 1; 2; 3;

Cobalt binding site 1 out of 3 in the Structure of PFGRX1 with Cobalt


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of PFGRX1 with Cobalt within 5.0Å range: probe atom residue distance (Å) B Occ A:Co203 b:24.0 occ:0.64 OE1 A:GLU51 1.9 22.7 1.0 NE2 A:HIS49 2.1 25.4 1.0 O A:HOH389 2.2 33.8 1.0 O A:HOH306 2.2 31.8 1.0 O A:HOH379 2.2 33.7 1.0 O A:HOH400 2.3 32.2 1.0 CE1 A:HIS49 2.8 26.7 1.0 CD A:GLU51 2.9 25.3 1.0 OE2 A:GLU51 3.3 21.6 1.0 CD2 A:HIS49 3.3 25.7 1.0 ND1 A:HIS49 4.0 28.5 1.0 O A:HOH363 4.2 29.4 1.0 CG A:GLU51 4.3 20.5 1.0 CG A:HIS49 4.3 23.9 1.0 O A:VAL50 4.4 17.8 1.0 CB A:GLU51 4.5 18.6 1.0 O A:HOH399 4.5 41.3 1.0 CA A:GLU51 4.6 15.4 1.0 CD1 A:ILE15 5.0 23.3 1.0

Cobalt binding site 2 out of 3 in the Structure of PFGRX1 with Cobalt


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Structure of PFGRX1 with Cobalt within 5.0Å range: probe atom residue distance (Å) B Occ A:Co204 b:67.8 occ:0.49 OE2 A:GLU28 2.6 48.2 1.0 O A:HOH401 2.8 62.2 1.0 CD A:GLU28 3.7 50.0 1.0 OE1 A:GLU28 4.1 55.9 1.0 CG A:GLU28 5.0 33.4 1.0

Cobalt binding site 3 out of 3 in the Structure of PFGRX1 with Cobalt


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Structure of PFGRX1 with Cobalt within 5.0Å range: probe atom residue distance (Å) B Occ A:Co205 b:56.4 occ:0.47 OD1 A:ASN43 2.1 41.7 0.5 O A:HOH407 2.7 73.8 1.0 CG A:ASN43 3.2 33.5 0.5 ND2 A:ASN43 3.8 35.7 0.5 O A:LYS40 4.0 22.7 1.0 O A:GLY41 4.4 26.6 1.0 CB A:ASN43 4.5 28.0 0.5 OD1 A:ASN43 4.5 41.7 0.5 CB A:ASN43 4.5 28.0 0.5 CA A:ASN43 4.6 24.3 0.5 CA A:ASN43 4.6 24.4 0.5 N A:ASN43 4.6 25.0 1.0 CG A:ASN43 4.7 32.8 0.5 CA A:GLY41 4.8 21.0 1.0 C A:GLY41 4.8 22.5 1.0

Y.Manickam, A.Sharma. Interaction of Metals with PFGRX1 To Be Published.