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Cobalt in PDB 7etg: Crystal Structure of Abhpai-Co-Pyruvate-Succinic Semialdehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii

Enzymatic activity of Crystal Structure of Abhpai-Co-Pyruvate-Succinic Semialdehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii

All present enzymatic activity of Crystal Structure of Abhpai-Co-Pyruvate-Succinic Semialdehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii:
4.1.2.52;

Protein crystallography data

The structure of Crystal Structure of Abhpai-Co-Pyruvate-Succinic Semialdehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii, PDB code: 7etg was solved by P.Watthaisong, A.Binlaeh, A.Jaruwat, P.Chaiyen, P.Chitnumsub, S.Maenpuen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.35 / 1.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 147.75, 89.691, 86.299, 90, 122.49, 90
R / Rfree (%) 19 / 22.2

Other elements in 7etg:

The structure of Crystal Structure of Abhpai-Co-Pyruvate-Succinic Semialdehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Abhpai-Co-Pyruvate-Succinic Semialdehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii (pdb code 7etg). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 3 binding sites of Cobalt where determined in the Crystal Structure of Abhpai-Co-Pyruvate-Succinic Semialdehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii, PDB code: 7etg:
Jump to Cobalt binding site number: 1; 2; 3;

Cobalt binding site 1 out of 3 in 7etg

Go back to Cobalt Binding Sites List in 7etg
Cobalt binding site 1 out of 3 in the Crystal Structure of Abhpai-Co-Pyruvate-Succinic Semialdehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Abhpai-Co-Pyruvate-Succinic Semialdehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co302

b:14.4
occ:1.00
 O3 A:PYR301 2.0 13.7 1.0
O1 A:PYR301 2.1 11.8 1.0
O B:HOH422 2.1 10.4 1.0
OE2 A:GLU151 2.1 13.0 1.0
OD2 A:ASP177 2.1 13.2 1.0
O A:HOH419 2.2 12.9 1.0
C2 A:PYR301 2.7 13.5 1.0
C1 A:PYR301 2.8 13.8 1.0
CG A:ASP177 3.1 12.8 1.0
CD A:GLU151 3.1 13.6 1.0
CB A:ASP177 3.5 13.0 1.0
OE1 A:GLU151 3.5 13.0 1.0
NE2 A:GLN149 3.7 15.4 1.0
O A:HOH437 3.9 12.0 1.0
NH1 A:ARG72 3.9 12.2 1.0
O2 A:PYR301 4.1 13.4 1.0
O B:VAL120 4.2 14.5 1.0
C3 A:PYR301 4.2 13.2 1.0
OD1 A:ASP177 4.2 11.7 1.0
N A:ASP177 4.3 13.0 1.0
CG A:GLU151 4.4 12.4 1.0
O4 B:SSN301 4.4 23.2 1.0
CA A:GLY174 4.5 16.4 1.0
OE1 A:GLU46 4.5 11.1 1.0
CA A:ASP177 4.5 13.5 1.0
CD A:GLN149 4.7 14.4 1.0
CB A:GLU151 4.7 12.8 1.0
OE1 A:GLN149 4.9 16.7 1.0
CZ A:ARG72 4.9 11.3 1.0
NE2 A:HIS47 5.0 10.2 1.0

Cobalt binding site 2 out of 3 in 7etg

Go back to Cobalt Binding Sites List in 7etg
Cobalt binding site 2 out of 3 in the Crystal Structure of Abhpai-Co-Pyruvate-Succinic Semialdehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Abhpai-Co-Pyruvate-Succinic Semialdehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co303

b:14.6
occ:1.00
 O3 B:PYR302 2.0 16.1 1.0
O B:HOH412 2.0 12.0 1.0
OE2 B:GLU151 2.1 13.4 1.0
O C:HOH438 2.1 9.4 1.0
OD2 B:ASP177 2.2 13.3 1.0
O2 B:PYR302 2.2 13.5 1.0
C2 B:PYR302 2.8 16.4 1.0
C1 B:PYR302 2.9 16.5 1.0
CD B:GLU151 3.0 14.6 1.0
CG B:ASP177 3.2 12.6 1.0
OE1 B:GLU151 3.4 14.4 1.0
CB B:ASP177 3.6 12.9 1.0
NE2 B:GLN149 3.7 14.5 1.0
O B:HOH425 3.8 10.5 1.0
NH1 B:ARG72 3.8 11.7 1.0
O1 B:PYR302 4.2 14.6 1.0
C3 B:PYR302 4.2 16.6 1.0
O C:VAL120 4.3 15.4 1.0
OD1 B:ASP177 4.3 12.7 1.0
O4 C:SSN301 4.3 23.5 1.0
CG B:GLU151 4.3 12.8 1.0
OE1 B:GLU46 4.4 11.2 1.0
N B:ASP177 4.5 13.2 1.0
CA B:GLY174 4.5 16.5 1.0
CD B:GLN149 4.6 14.8 1.0
CA B:ASP177 4.7 13.6 1.0
OE1 B:GLN149 4.7 17.5 1.0
CB B:GLU151 4.7 13.2 1.0
CZ B:ARG72 4.8 11.8 1.0
NE2 B:HIS47 4.9 10.5 1.0

Cobalt binding site 3 out of 3 in 7etg

Go back to Cobalt Binding Sites List in 7etg
Cobalt binding site 3 out of 3 in the Crystal Structure of Abhpai-Co-Pyruvate-Succinic Semialdehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Crystal Structure of Abhpai-Co-Pyruvate-Succinic Semialdehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Co303

b:14.8
occ:1.00
 O C:HOH441 2.0 13.4 1.0
O3 C:PYR302 2.0 15.1 1.0
O C:HOH417 2.1 11.9 1.0
OE2 C:GLU151 2.1 14.2 1.0
OD2 C:ASP177 2.1 12.8 1.0
O1 C:PYR302 2.1 13.8 1.0
C2 C:PYR302 2.8 15.2 1.0
C1 C:PYR302 2.9 15.8 1.0
CD C:GLU151 3.1 15.0 1.0
CG C:ASP177 3.1 11.4 1.0
OE1 C:GLU151 3.4 14.4 1.0
CB C:ASP177 3.5 12.3 1.0
O C:HOH411 3.7 10.1 1.0
NE2 C:GLN149 3.7 14.3 1.0
NH1 C:ARG72 3.9 11.7 1.0
O A:VAL120 4.2 14.7 1.0
O2 C:PYR302 4.2 14.3 1.0
OD1 C:ASP177 4.2 11.1 1.0
C3 C:PYR302 4.3 15.2 1.0
O4 A:SSN303 4.3 22.8 1.0
N C:ASP177 4.4 12.7 1.0
CG C:GLU151 4.4 13.2 1.0
OE1 C:GLU46 4.4 12.3 1.0
CA C:ASP177 4.5 12.9 1.0
CA C:GLY174 4.6 16.9 1.0
CD C:GLN149 4.7 14.4 1.0
CB C:GLU151 4.7 13.5 1.0
NE2 C:HIS47 4.9 10.9 1.0
CZ C:ARG72 4.9 11.2 1.0
OE1 C:GLN149 4.9 17.5 1.0

Reference:

P.Watthaisong, A.Binlaeh, A.Jaruwat, N.Lawan, J.Tantipisit, J.Jaroensuk, L.Chuaboon, J.Phonbuppha, R.Tinikul, P.Chaiyen, P.Chitnumsub, S.Maenpuen. Catalytic and Structural Insights Into A Stereospecific and Thermostable Class II Aldolase Hpai From Acinetobacter Baumannii. J.Biol.Chem. 01280 2021.
ISSN: ESSN 1083-351X
PubMed: 34624314
DOI: 10.1016/J.JBC.2021.101280
Page generated: Sun Jul 13 21:28:29 2025

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