Atomistry » Cobalt » PDB 7nqf-7vo8 » 7rzk
Atomistry »
  Cobalt »
    PDB 7nqf-7vo8 »
      7rzk »

Cobalt in PDB 7rzk: Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data

Protein crystallography data

The structure of Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data, PDB code: 7rzk was solved by M.G.Cuypers, C.Subramanian, C.O.Rock, S.W.White, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.95 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.005, 57.521, 81.248, 90, 90, 90
R / Rfree (%) 15.1 / 19

Other elements in 7rzk:

The structure of Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data (pdb code 7rzk). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 6 binding sites of Cobalt where determined in the Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data, PDB code: 7rzk:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5; 6;

Cobalt binding site 1 out of 6 in 7rzk

Go back to Cobalt Binding Sites List in 7rzk
Cobalt binding site 1 out of 6 in the Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co304

b:22.4
occ:0.51
 MG A:MG303 0.2 22.7 0.5
O A:HOH481 2.0 22.7 1.0
OD2 A:ASP38 2.1 23.8 1.0
OD2 A:ASP40 2.1 20.0 1.0
O2B A:ADP301 2.2 20.3 1.0
O A:HOH420 2.2 22.1 1.0
O A:HOH491 2.4 24.7 1.0
CG A:ASP38 3.1 24.7 1.0
CG A:ASP40 3.1 23.2 1.0
PB A:ADP301 3.2 22.5 1.0
OD1 A:ASP40 3.4 21.0 1.0
OD1 A:ASP38 3.5 19.0 1.0
O3B A:ADP301 3.5 19.7 1.0
MG A:MG302 3.5 20.0 1.0
O A:HOH490 3.9 38.4 1.0
O1B A:ADP301 4.0 28.9 1.0
ND2 A:ASN44 4.2 22.0 1.0
O A:HOH562 4.4 40.3 1.0
CB A:ASP38 4.4 23.1 1.0
CB A:ASP40 4.5 23.7 1.0
O3A A:ADP301 4.6 22.3 1.0
O A:HOH411 4.6 40.1 1.0
O A:HOH432 4.7 19.1 1.0
O1A A:ADP301 4.9 18.7 1.0

Cobalt binding site 2 out of 6 in 7rzk

Go back to Cobalt Binding Sites List in 7rzk
Cobalt binding site 2 out of 6 in the Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co305

b:85.6
occ:1.00
 O A:HOH533 2.3 61.1 1.0
OE2 A:GLU103 2.4 72.4 1.0
O A:HOH550 2.7 86.7 1.0
O A:HOH475 2.7 62.3 1.0
CD A:GLU103 3.4 56.7 1.0
O A:HOH479 3.5 62.4 1.0
OE1 A:GLU103 3.9 48.3 1.0
NZ A:LYS4 4.2 35.5 1.0
CE A:LYS4 4.5 52.8 1.0
CG A:GLU103 4.6 28.8 1.0
CD A:LYS4 4.8 31.9 1.0

Cobalt binding site 3 out of 6 in 7rzk

Go back to Cobalt Binding Sites List in 7rzk
Cobalt binding site 3 out of 6 in the Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co306

b:143.4
occ:1.00
 O A:HOH555 2.6 74.8 1.0
O A:HOH532 2.8 57.6 1.0
O A:HOH575 3.0 88.4 1.0
OE2 A:GLU101 3.2 60.1 1.0
OE1 A:GLU101 3.4 48.0 1.0
CD A:GLU101 3.7 49.5 1.0
O A:HOH465 4.9 38.3 1.0

Cobalt binding site 4 out of 6 in 7rzk

Go back to Cobalt Binding Sites List in 7rzk
Cobalt binding site 4 out of 6 in the Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co307

b:111.6
occ:1.00
 OE1 A:GLU57 2.6 43.0 1.0
O A:HOH568 3.4 65.8 1.0
CD A:GLU57 3.8 38.4 1.0
CG A:GLU54 3.9 41.5 1.0
OE2 A:GLU54 4.4 62.3 1.0
OE2 A:GLU57 4.4 41.1 1.0
CD A:GLU54 4.6 58.4 1.0
CA A:GLU54 4.8 25.0 1.0
NE A:ARG53 4.9 35.5 1.0
CB A:GLU57 4.9 29.6 1.0
CB A:GLU54 4.9 31.5 1.0
CG A:GLU57 4.9 32.8 1.0

Cobalt binding site 5 out of 6 in 7rzk

Go back to Cobalt Binding Sites List in 7rzk
Cobalt binding site 5 out of 6 in the Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 5 of Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co308

b:92.7
occ:1.00
 O A:HOH414 2.7 40.9 1.0
O A:HOH545 2.8 52.6 1.0
O A:HOH566 3.8 52.3 1.0
O A:MET125 4.0 27.8 1.0
O A:LYS122 4.1 23.1 1.0
O A:VAL124 4.1 26.1 1.0
CA A:MET125 4.4 28.6 1.0
C A:MET125 4.6 27.5 1.0
C A:LYS122 4.9 22.6 1.0
O A:TYR121 4.9 25.3 1.0
C A:VAL124 5.0 22.9 1.0

Cobalt binding site 6 out of 6 in 7rzk

Go back to Cobalt Binding Sites List in 7rzk
Cobalt binding site 6 out of 6 in the Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 6 of Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co309

b:107.2
occ:1.00
 O A:HOH516 2.7 50.9 1.0
O A:HOH408 2.7 45.7 1.0
OE2 A:GLU118 3.1 51.7 1.0
OE1 A:GLU118 3.5 44.0 1.0
NE2 A:GLN114 3.6 63.6 1.0
CD A:GLU118 3.7 53.0 1.0
CD A:GLN114 4.6 61.1 1.0

Reference:

M.G.Cuypers, C.Subramanian, C.O.Rock, S.W.White. Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data To Be Published.
Page generated: Sun Jul 13 21:37:21 2025

Last articles

Mg in 3CB3
Mg in 3CC6
Mg in 3C9U
Mg in 3CBT
Mg in 3CBQ
Mg in 3CBG
Mg in 3CBE
Mg in 3C9T
Mg in 3CB9
Mg in 3CAW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy