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Cobalt in PDB 8tkz: Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4

Protein crystallography data

The structure of Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4, PDB code: 8tkz was solved by A.Jacewicz, A.M.Sanchez, S.Shuman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.42 / 2.06
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.109, 91.163, 106.813, 90, 90, 90
R / Rfree (%) 17.4 / 22.7

Other elements in 8tkz:

The structure of Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Sodium (Na) 1 atom
Zinc (Zn) 2 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4 (pdb code 8tkz). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4, PDB code: 8tkz:

Cobalt binding site 1 out of 1 in 8tkz

Go back to Cobalt Binding Sites List in 8tkz
Cobalt binding site 1 out of 1 in the Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co505

b:23.3
occ:0.83
OD1 B:ASP290 1.9 25.1 1.0
OD1 B:ASN253 2.0 26.4 1.0
O2 B:PO4506 2.1 27.7 1.0
O B:HOH678 2.1 24.2 1.0
OD1 B:ASN252 2.1 24.2 1.0
O B:HOH618 2.2 23.1 1.0
CG B:ASP290 2.9 30.0 1.0
CG B:ASN252 3.0 25.0 1.0
CG B:ASN253 3.1 29.6 1.0
OD2 B:ASP290 3.2 26.0 1.0
P B:PO4506 3.3 40.5 1.0
ND2 B:ASN252 3.3 28.8 1.0
O4 B:PO4506 3.5 26.8 1.0
ND2 B:ASN253 3.6 34.7 1.0
NA B:NA507 3.7 43.8 1.0
O B:HOH601 4.1 34.5 1.0
O3 B:PO4506 4.1 39.6 1.0
CB B:ASP290 4.3 26.7 1.0
N B:ASN253 4.3 24.1 1.0
CB B:ASN252 4.4 26.9 1.0
CB B:ASN253 4.4 27.6 1.0
C B:ASN252 4.4 24.4 1.0
O1 B:PO4506 4.4 40.1 1.0
N B:ASP290 4.5 28.2 1.0
CA B:ASP290 4.5 29.6 1.0
CA B:ASN253 4.5 28.3 1.0
O B:PHE287 4.6 23.3 1.0
CA B:ASN252 4.7 28.5 1.0
O B:HOH710 4.7 26.8 1.0
CB B:PHE287 4.8 19.8 1.0
O B:HOH643 4.9 23.8 1.0
O B:ASN252 4.9 27.9 1.0
CB B:SER289 4.9 28.9 1.0
C B:SER289 4.9 30.7 1.0

Reference:

A.Jacewicz, A.M.Sanchez, S.Shuman. Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4 To Be Published.
Page generated: Tue Jul 30 20:04:00 2024

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