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Cobalt in PDB 8vvl: Cchfv GP38 Bound to C13G8 Fab

Protein crystallography data

The structure of Cchfv GP38 Bound to C13G8 Fab, PDB code: 8vvl was solved by C.K.Hjorth, A.K.Mishra, J.S.Mclellan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.16 / 1.80
Space group I 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 100.429, 67.629, 140.983, 90, 96.53, 90
R / Rfree (%) 20 / 21.5

Other elements in 8vvl:

The structure of Cchfv GP38 Bound to C13G8 Fab also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Cchfv GP38 Bound to C13G8 Fab (pdb code 8vvl). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Cchfv GP38 Bound to C13G8 Fab, PDB code: 8vvl:

Cobalt binding site 1 out of 1 in 8vvl

Go back to Cobalt Binding Sites List in 8vvl
Cobalt binding site 1 out of 1 in the Cchfv GP38 Bound to C13G8 Fab


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Cchfv GP38 Bound to C13G8 Fab within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Co302

b:65.9
occ:0.52
O L:HOH418 2.0 56.4 1.0
OE2 L:GLU123 2.3 46.8 1.0
CD L:GLU123 3.0 48.8 1.0
OE1 L:GLU123 3.3 48.9 1.0
O L:HOH548 3.8 57.5 1.0
CB L:ASP122 3.8 46.6 1.0
N L:ASP122 3.9 40.2 1.0
OD2 L:ASP122 4.3 54.7 1.0
N L:GLU123 4.3 40.5 1.0
CG L:GLU123 4.3 46.7 1.0
CA L:ASP122 4.4 42.0 1.0
CG L:ASP122 4.6 50.8 1.0
CB L:SER121 4.7 36.4 1.0
C L:ASP122 4.8 41.1 1.0
C L:SER121 4.8 38.4 1.0
CG H:PRO123 4.9 37.0 1.0
CA L:SER121 5.0 37.7 1.0

Reference:

O.S.Shin, S.R.Monticelli, C.K.Hjorth, V.Hornet, M.Doyle, D.Abelson, A.I.Kuehne, A.Wang, R.R.Bakken, A.K.Mishra, M.Middlecamp, E.Champney, L.Stuart, D.P.Maurer, J.Li, J.L.Berrigan, S.Balinandi, J.J.Lutwama, L.Lobel, L.Zeitlin, L.M.Walker, J.M.Dye, K.Chandran, A.S.Herbert, N.T.Pauli, J.S.Mclellan. Crimean-Congo Hemorrhagic Fever Survivors Elicit Protective Non-Neutralizing Antibodies That Target 11 Overlapping Regions on Viral Glycoprotein GP38 To Be Published.
Page generated: Sun Jul 13 22:07:11 2025

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