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Cobalt in PDB 8wpc: Complex Structure of Athppd with LB553

Enzymatic activity of Complex Structure of Athppd with LB553

All present enzymatic activity of Complex Structure of Athppd with LB553:
1.13.11.27;

Protein crystallography data

The structure of Complex Structure of Athppd with LB553, PDB code: 8wpc was solved by G.-F.Yang, H.-Y.Lin, J.Dong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.96 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 77.267, 84.121, 62.783, 90, 100.65, 90
R / Rfree (%) 18.9 / 21.5

Other elements in 8wpc:

The structure of Complex Structure of Athppd with LB553 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Complex Structure of Athppd with LB553 (pdb code 8wpc). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Complex Structure of Athppd with LB553, PDB code: 8wpc:

Cobalt binding site 1 out of 1 in 8wpc

Go back to Cobalt Binding Sites List in 8wpc
Cobalt binding site 1 out of 1 in the Complex Structure of Athppd with LB553


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Complex Structure of Athppd with LB553 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co501

b:29.7
occ:1.00
O14 A:X2T502 2.0 28.4 1.0
O09 A:X2T502 2.0 31.2 1.0
OE1 A:GLU394 2.1 26.7 1.0
O A:HOH643 2.2 23.1 1.0
NE2 A:HIS226 2.3 24.9 1.0
NE2 A:HIS308 2.3 26.5 1.0
C07 A:X2T502 3.0 35.0 1.0
C10 A:X2T502 3.0 30.6 1.0
CE1 A:HIS308 3.1 29.0 1.0
CD A:GLU394 3.1 27.4 1.0
CE1 A:HIS226 3.2 20.4 1.0
CD2 A:HIS226 3.3 23.0 1.0
C08 A:X2T502 3.4 33.4 1.0
CD2 A:HIS308 3.4 26.7 1.0
OE2 A:GLU394 3.5 25.8 1.0
ND1 A:HIS308 4.3 24.0 1.0
C01 A:X2T502 4.3 36.6 1.0
ND1 A:HIS226 4.4 24.8 1.0
O A:PHE419 4.4 33.9 1.0
C11 A:X2T502 4.4 32.9 1.0
CG A:HIS226 4.4 22.4 1.0
CG2 A:VAL228 4.5 21.8 1.0
CG A:GLU394 4.5 23.9 1.0
CB A:ALA310 4.5 22.5 1.0
CG A:HIS308 4.5 24.2 1.0
CB A:GLU394 4.7 23.1 1.0
CE2 A:PHE381 4.7 32.7 1.0
CD2 A:PHE419 4.8 26.9 1.0
CB A:PHE419 4.8 30.0 1.0
C13 A:X2T502 4.9 36.9 1.0
O15 A:X2T502 4.9 31.2 1.0

Reference:

G.-F.Yang, H.-Y.Lin, J.Dong. Complex Structure of Athppd with LB553 To Be Published.
Page generated: Sun Jul 13 22:08:04 2025

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