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Cobalt in PDB 8x6a: Complex Structure of Athppd with Y18992

Enzymatic activity of Complex Structure of Athppd with Y18992

All present enzymatic activity of Complex Structure of Athppd with Y18992:
1.13.11.27;

Protein crystallography data

The structure of Complex Structure of Athppd with Y18992, PDB code: 8x6a was solved by G.-F.Yang, H.-Y.Lin, J.Dong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.50 / 1.48
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 76.869, 83.882, 62.008, 90, 100.36, 90
R / Rfree (%) 18.7 / 20.3

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Complex Structure of Athppd with Y18992 (pdb code 8x6a). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Complex Structure of Athppd with Y18992, PDB code: 8x6a:

Cobalt binding site 1 out of 1 in 8x6a

Go back to Cobalt Binding Sites List in 8x6a
Cobalt binding site 1 out of 1 in the Complex Structure of Athppd with Y18992


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Complex Structure of Athppd with Y18992 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co501

b:15.4
occ:1.00
OE1 A:GLU394 2.0 14.2 1.0
O A:HOH668 2.1 13.5 1.0
O14 A:YFC502 2.1 17.9 1.0
O20 A:YFC502 2.2 19.5 1.0
NE2 A:HIS226 2.2 14.7 1.0
NE2 A:HIS308 2.3 13.2 1.0
CD A:GLU394 3.1 15.4 1.0
CE1 A:HIS308 3.1 14.7 1.0
CE1 A:HIS226 3.2 13.8 1.0
C11 A:YFC502 3.2 22.5 1.0
C13 A:YFC502 3.2 20.1 1.0
CD2 A:HIS226 3.3 12.4 1.0
CD2 A:HIS308 3.3 12.2 1.0
OE2 A:GLU394 3.5 16.6 1.0
C12 A:YFC502 3.7 22.0 1.0
C18 A:YFC502 4.2 21.1 1.0
ND1 A:HIS226 4.3 14.4 1.0
ND1 A:HIS308 4.3 13.4 1.0
CG A:HIS226 4.4 13.8 1.0
CB A:ALA310 4.4 12.3 1.0
C05 A:YFC502 4.4 23.6 1.0
CG A:HIS308 4.4 12.3 1.0
O A:PHE419 4.4 20.5 1.0
CG2 A:VAL228 4.4 13.0 1.0
CG A:GLU394 4.4 13.4 1.0
CE2 A:PHE381 4.5 18.7 1.0
CB A:GLU394 4.7 11.6 1.0
C15 A:YFC502 4.7 24.7 1.0
CD2 A:PHE419 4.9 17.4 1.0
CZ A:PHE381 4.9 20.4 1.0
CB A:PHE419 4.9 15.8 1.0

Reference:

G.-F.Yang, H.-Y.Lin, J.Dong. Complex Structure of Athppd with Y18992 To Be Published.
Page generated: Sun Jul 13 22:08:39 2025

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