Cobalt in PDB 8x7c: Crystal Structure of ZMHSL1A

The structure of Crystal Structure of ZMHSL1A, PDB code: 8x7c was solved by H.-Y.Lin, J.Dong, G.-F.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.84 / 1.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	88.062, 54.368, 174.744, 90, 104.34, 90
R / Rfree (%)	17.4 / 20.4

The binding sites of Cobalt atom in the Crystal Structure of ZMHSL1A (pdb code 8x7c). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of ZMHSL1A, PDB code: 8x7c:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure of ZMHSL1A


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of ZMHSL1A within 5.0Å range: probe atom residue distance (Å) B Occ B:Co401 b:14.9 occ:1.00 O1 B:AKG402 2.1 14.9 1.0 NE2 B:HIS228 2.1 12.7 1.0 O B:HOH546 2.1 15.7 1.0 O5 B:AKG402 2.1 15.7 1.0 NE2 B:HIS285 2.1 14.8 1.0 OD1 B:ASP230 2.2 15.7 1.0 C1 B:AKG402 2.8 14.3 1.0 C2 B:AKG402 2.8 15.4 1.0 CE1 B:HIS228 3.0 15.1 1.0 CD2 B:HIS285 3.1 15.0 1.0 CE1 B:HIS285 3.1 13.9 1.0 CG B:ASP230 3.1 15.8 1.0 CD2 B:HIS228 3.1 14.9 1.0 OD2 B:ASP230 3.4 15.6 1.0 O B:HOH702 3.9 25.2 1.0 O2 B:AKG402 4.0 15.4 1.0 O B:HOH661 4.1 19.6 1.0 ND1 B:HIS228 4.1 16.9 1.0 ND1 B:HIS285 4.2 14.3 1.0 CG B:HIS285 4.2 13.7 1.0 CG B:HIS228 4.2 14.9 1.0 O B:HOH562 4.2 26.8 1.0 C3 B:AKG402 4.3 17.8 1.0 CE2 B:PHE301 4.5 14.7 1.0 CB B:ASP230 4.5 14.7 1.0 C4 B:AKG402 4.8 15.4 1.0 CZ B:PHE301 4.8 16.4 1.0 N B:ASP230 4.9 14.9 1.0 CA B:ASP230 5.0 13.9 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure of ZMHSL1A


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of ZMHSL1A within 5.0Å range: probe atom residue distance (Å) B Occ A:Co401 b:18.4 occ:1.00 NE2 A:HIS228 2.1 19.3 1.0 O5 A:AKG402 2.1 17.3 1.0 O2 A:AKG402 2.1 19.7 1.0 NE2 A:HIS285 2.1 18.5 1.0 O A:HOH530 2.2 22.7 1.0 OD1 A:ASP230 2.2 18.7 1.0 C2 A:AKG402 2.8 23.1 1.0 C1 A:AKG402 2.8 22.5 1.0 CE1 A:HIS228 3.0 18.1 1.0 CD2 A:HIS285 3.1 17.3 1.0 CE1 A:HIS285 3.1 19.1 1.0 CG A:ASP230 3.1 19.3 1.0 CD2 A:HIS228 3.2 19.2 1.0 OD2 A:ASP230 3.4 20.2 1.0 O A:HOH776 3.9 31.2 1.0 O1 A:AKG402 4.0 20.3 1.0 O A:HOH670 4.1 27.5 1.0 ND1 A:HIS228 4.1 20.1 1.0 ND1 A:HIS285 4.2 16.6 1.0 CG A:HIS285 4.2 17.7 1.0 C3 A:AKG402 4.2 20.6 1.0 CG A:HIS228 4.2 20.5 1.0 O A:HOH630 4.4 34.9 1.0 CE2 A:PHE301 4.5 20.6 1.0 CB A:ASP230 4.6 18.9 1.0 C4 A:AKG402 4.8 19.2 1.0 N A:ASP230 4.9 20.4 1.0 CZ A:PHE301 4.9 20.1 1.0 CA A:ASP230 5.0 19.7 1.0

J.Dong, X.H.Yu, J.Dong, G.H.Wang, X.L.Wang, D.W.Wang, Y.C.Yan, H.Xiao, B.Q.Ye, H.Y.Lin, G.F.Yang. An Artificially Evolved Gene For Herbicide-Resistant Rice Breeding. Proc.Natl.Acad.Sci.Usa V. 121 85121 2024.
ISSN: ESSN 1091-6490
PubMed: 39133859
DOI: 10.1073/PNAS.2407285121