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Cobalt in PDB 8yes: Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate
Enzymatic activity of Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate
All present enzymatic activity of Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate:
2.7.1.156; 2.7.7.62;
2.7.1.156; 2.7.7.62;
Protein crystallography data
The structure of Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate, PDB code: 8yes
was solved by
Y.Nam,
H.Do,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 47.96 / 2.60 |
| Space group | P 2 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 99.213, 102.922, 129.228, 90, 90, 90 |
| R / Rfree (%) | 19.3 / 26.3 |
Cobalt Binding Sites:
The binding sites of Cobalt atom in the Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate
(pdb code 8yes). This binding sites where shown within
5.0 Angstroms radius around Cobalt atom.
In total 6 binding sites of Cobalt where determined in the Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate, PDB code: 8yes:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Cobalt where determined in the Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate, PDB code: 8yes:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5; 6;
Cobalt binding site 1 out of 6 in 8yes
Go back to
Cobalt Binding Sites List in 8yes
Cobalt binding site 1 out
of 6 in the Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 1 of Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate within 5.0Å range:
|
Cobalt binding site 2 out of 6 in 8yes
Go back to
Cobalt Binding Sites List in 8yes
Cobalt binding site 2 out
of 6 in the Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 2 of Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate within 5.0Å range:
|
Cobalt binding site 3 out of 6 in 8yes
Go back to
Cobalt Binding Sites List in 8yes
Cobalt binding site 3 out
of 6 in the Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 3 of Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate within 5.0Å range:
|
Cobalt binding site 4 out of 6 in 8yes
Go back to
Cobalt Binding Sites List in 8yes
Cobalt binding site 4 out
of 6 in the Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 4 of Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate within 5.0Å range:
|
Cobalt binding site 5 out of 6 in 8yes
Go back to
Cobalt Binding Sites List in 8yes
Cobalt binding site 5 out
of 6 in the Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 5 of Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate within 5.0Å range:
|
Cobalt binding site 6 out of 6 in 8yes
Go back to
Cobalt Binding Sites List in 8yes
Cobalt binding site 6 out
of 6 in the Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 6 of Crystal Structure of Adenosylcobinamide Kinase / Adenosylcobinamide Phosphate Guanylyltransferase Complexed with Adenosylcobinamide- Phosphate within 5.0Å range:
|
Reference:
Y.Nam,
Y.Y.Ahn,
B.M.Kim,
K.Kim,
J.H.Lee,
H.Do.
A Structure-Based Mechanism of Adenosylcobinamide Kinase/Adenosylcobinamide Phosphate Guanylyltransferase (Mpacobu) From Methylocapsa Palsarum. Int.J.Biol.Macromol. V. 280 36021 2024.
ISSN: ISSN 0141-8130
PubMed: 39326622
DOI: 10.1016/J.IJBIOMAC.2024.136021
Page generated: Sun Jul 13 22:09:39 2025
ISSN: ISSN 0141-8130
PubMed: 39326622
DOI: 10.1016/J.IJBIOMAC.2024.136021
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