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Cobalt in PDB 9cbq: Methionine Synthase From Thermus Thermophilus HB8, Folate Demethylation State (Fol-on)

Enzymatic activity of Methionine Synthase From Thermus Thermophilus HB8, Folate Demethylation State (Fol-on)

All present enzymatic activity of Methionine Synthase From Thermus Thermophilus HB8, Folate Demethylation State (Fol-on):
2.1.1.13;

Protein crystallography data

The structure of Methionine Synthase From Thermus Thermophilus HB8, Folate Demethylation State (Fol-on), PDB code: 9cbq was solved by K.Yamada, J.Mendoza, M.Koutmos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.72 / 2.87
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 95.164, 95.164, 274.337, 90, 90, 120
R / Rfree (%) 20.8 / 26.8

Other elements in 9cbq:

The structure of Methionine Synthase From Thermus Thermophilus HB8, Folate Demethylation State (Fol-on) also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Chlorine (Cl) 1 atom

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Methionine Synthase From Thermus Thermophilus HB8, Folate Demethylation State (Fol-on) (pdb code 9cbq). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Methionine Synthase From Thermus Thermophilus HB8, Folate Demethylation State (Fol-on), PDB code: 9cbq:

Cobalt binding site 1 out of 1 in 9cbq

Go back to Cobalt Binding Sites List in 9cbq
Cobalt binding site 1 out of 1 in the Methionine Synthase From Thermus Thermophilus HB8, Folate Demethylation State (Fol-on)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Methionine Synthase From Thermus Thermophilus HB8, Folate Demethylation State (Fol-on) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co901

b:104.7
occ:1.00
 CO A:B12901 0.0 104.7 1.0
N24 A:B12901 1.8 99.0 1.0
N21 A:B12901 1.8 106.0 1.0
N23 A:B12901 1.9 101.1 1.0
N22 A:B12901 1.9 112.7 1.0
C19 A:B12901 2.7 102.9 1.0
C1 A:B12901 2.8 97.5 1.0
C16 A:B12901 2.8 92.3 1.0
C4 A:B12901 2.8 105.6 1.0
C9 A:B12901 2.9 114.3 1.0
C14 A:B12901 2.9 87.0 1.0
C11 A:B12901 2.9 92.5 1.0
CE1 A:HIS761 3.0 103.4 1.0
C6 A:B12901 3.0 101.9 1.0
C10 A:B12901 3.2 94.5 1.0
C15 A:B12901 3.3 92.0 1.0
C5 A:B12901 3.4 106.9 1.0
NE2 A:HIS761 3.4 111.8 1.0
C20 A:B12901 3.6 94.7 1.0
C18 A:B12901 4.0 109.3 1.0
C2 A:B12901 4.0 99.1 1.0
C3 A:B12901 4.1 93.4 1.0
C17 A:B12901 4.1 98.7 1.0
ND1 A:HIS761 4.2 128.5 1.0
C12 A:B12901 4.2 91.8 1.0
C13 A:B12901 4.2 80.0 1.0
C8 A:B12901 4.3 111.2 1.0
C26 A:B12901 4.3 108.2 1.0
C7 A:B12901 4.3 112.1 1.0
C46 A:B12901 4.7 92.0 1.0
C53 A:B12901 4.8 107.2 1.0
CD2 A:HIS761 4.8 103.3 1.0
C48 A:B12901 4.8 89.2 1.0
C37 A:B12901 4.8 111.8 1.0
C54 A:B12901 4.8 81.6 1.0
C35 A:B12901 4.9 102.7 1.0
O39 A:B12901 4.9 125.3 1.0
C41 A:B12901 4.9 109.0 1.0

Reference:

J.Mendoza, K.Yamada, M.Koutmos. Methionine Synthase From Thermus Thermophilus HB8, Folate Demethylation State (Fol-on) To Be Published.
Page generated: Sun Jul 13 22:12:05 2025

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